BAC Information

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BAC

Clone NameMSMg01-263O04
Chromosome18 (Build37)
Map Location 70,289,255 - 70,387,186
singlet/doubletdoublet
Overlap geneRab27b
Upstream geneLOC100043380, EG225681, Tcf4, Ccdc68
Downstream gene2310002L13Rik, 4930503L19Rik, Stard6, Poli, Mbd2, EG668032
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263O04.T7 (MSMg01no263_o04.b1)MSMg01-263O04.TJ (MSMg01no263_o04.g1)
ACCAG405586AG405587
length740740
length of high quality
(start - end)		668 (46 - 713)636 (79 - 714)
definitionCHROMAT_FILE: MSMg01no263_o04.b1 PHD_FILE: MSMg01no263_o04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:55 2005CHROMAT_FILE: MSMg01no263_o04.g1 PHD_FILE: MSMg01no263_o04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,289,255 - 70,289,918)(70,386,643 - 70,387,186)
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTTTTTTCATCCAAGATACCCTCGGAAATGCACTAGTAATTCTA
GATATCATCTTTTAGGCAAAAATGCAACTAAATACACGAAGGCACCTAAA
CGTATGGAAATAGTGATACAAATGGAAGGGCCACTGAAGATTCATTTCCT
TCTTTCCATTTACTATTCAGCATTTACTAAACATGCTGTGTAGAATTTGA
GCTGTCAGTCTAGAAACTTGTATTTTTAAGAGTTTCTCTAAGCAGAAACT
CTTACGAGCTTGTCAAACTGTCTTTGCATAAAGAAAAACTCAAAATATCC
CTTCTTGCTTATTTGTTTCTTCTATTATTCCATTGAGAAGCACGGAGTCC
CCTGTAAATTAATTTCTCCCCAGGCTGCCACAGCAAATGGCATGAACTAG
GCAGTTATTACACAGGTAAGCTCAACCTCACTGGCTACATAGGTAAGCTC
AACCTCACTCCCCATCTTACCACATTTTAATAGTCATGTCCAACTTGCTT
TTACAGCAACACCTGTATTCTGTCTTCACTGTTGTAGCACAGTCTATTTC
TAGTGTATCAAAGGTTTTACCTCCCCCCACCCATGACCTTGACTAAGGTT
ATACACACCCAGCATCTTTTTAGAGGAGTCTTTCTCCGAGAAAACTCTAG
GTCTTGTCCTTAGAATGTGAGCTCTCTGTTTCTCTCTTAN

NAAACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGCCCATGATCTTGCTCTAG
GACCTTTCTAGGACTGTTGGAACACTGGCAGAAGGCTTTAGCCATGTCAG
AATTCAATTTTAAAAAGCACTTATAATAGGAAAATACTGAAAGAGAGCAC
GTGGATTCATACACTAGACTAACGCGGTAATGGAACACGGGAATGAAAAA
TTAATGTATGGGTAGAGAACACTAGACTCCAGGAGGAGAGTTTCCTTGAA
ACTCTTTTGCCTCATGAGTGACTTTTAAACCTTTCGGCTTGTCCAGCTGA
CTCGACCAGAGACTGTAGCAATGGAGAATCTCTTACAAGCTGTGTCTACA
TAGGACTGATAACCAGTCCTTGCCCTTGGAGGAAATCTTGGCCTTTCCTC
ATACTTTCCACATGTGTAATGAATTCTCAGTTTATACACCAGCAGTCCTT
GTTGCTATCTTACCACCTTTAGTAAGCGAACATTAACAAAAGCCTTGTAC
AACCTCAGTGAAGTCACCGAAAGATTTTTCAATAAGTCACTGCACTGTCT
CCAGCTAAAAACAGTTTAGGCCACTTGTCTCCTTTGTTGAATAGAATCAG
CTATGATCCTCCTCTGTGGTTTGTCTCATCTTTCTATATAATCTCAGTTA
CATCTCTAAAAGATGCATAGGCTTATCCAGACAGTAAGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_o04.b1 MSMg01no263_o04.b1 CHROMAT_FILE:
MSMg01no263_o04.b1 PHD_FILE: MSMg01no263_o04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:55 2005
         (668 letters)



>mm_chr18_70289051_70290118
          Length = 1068

 Score = 1230 bits (636), Expect = 0.0
 Identities = 657/664 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacttttttcatccaagataccctcggaaatgcactagtaattctagatatcatc 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacttttttcattcaagataccctcggaaatgcactagtaattctagatatcatc 264

                                                                       
Query: 65  ttttaggcaaaaatgcaactaaatacacgaaggcacctaaacgtatggaaatagtgatac 124
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 265 ttttaggcaaaaatgcaactaaatacacaaaggcacctaaacgtatggaaatagtgatac 324

                                                                       
Query: 125 aaatggaagggccactgaagattcatttccttctttccatttactattcagcatttacta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaatggaagggccactgaagattcatttccttctttccatttactattcagcatttacta 384

                                                                       
Query: 185 aacatgctgtgtagaatttgagctgtcagtctagaaacttgtatttttaagagtttctct 244
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 385 aacatgctgtgtagaatttgagctgtcattctagaaacttgtatttttaagagtttctct 444

                                                                       
Query: 245 aagcagaaactcttacgagcttgtcaaactgtctttgcataaagaaaaactcaaaatatc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aagcagaaactcttacgagcttgtcaaactgtctttgcataaagaaaaactcaaaatatc 504

                                                                       
Query: 305 ccttcttgcttatttgtttcttctattattccattgagaagcacggagtcccctgtaaat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccttcttgcttatttgtttcttctattattccattgagaagcacggagtcccctgtaaat 564

                                                                       
Query: 365 taatttctccccaggctgccacagcaaatggcatgaactaggcagttattacacaggtaa 424
           |||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 taatttctctagaggctgccacagcaaatggcatgaactaggcagttattacacaggtaa 624

                                                                       
Query: 425 gctcaacctcactggctacataggtaagctcaacctcactccccatcttaccacatttta 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gctcaacctcactggctacataggtaagctcaacctcactccccatcttaccacatttta 684

                                                                       
Query: 485 atagtcatgtccaacttgcttttacagcaacacctgtattctgtcttcactgttgtagca 544
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atagtcacgtccaacttgcttttacagcaacacctgtattctgtcttcactgttgtagca 744

                                                                       
Query: 545 cagtctatttctagtgtatcaaaggttttacctccccccacccatgaccttgactaaggt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cagtctatttctagtgtatcaaaggttttacctccccccacccatgaccttgactaaggt 804

                                                                       
Query: 605 tatacacacccagcatctttttagaggagtctttctccgagaaaactctaggtcttgtcc 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tatacacacccagcatctttttagaggagtctttctccgagaaaactctaggtcttgtcc 864

               
Query: 665 ttag 668
           ||||
Sbjct: 865 ttag 868


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space:   696164
Effective search space used:   696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no263_o04.g1 MSMg01no263_o04.g1 CHROMAT_FILE:
MSMg01no263_o04.g1 PHD_FILE: MSMg01no263_o04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:56 2005
         (636 letters)



>mm_chr18_70386151_70387186
          Length = 1036

 Score =  998 bits (516), Expect = 0.0
 Identities = 537/544 (98%)
 Strand = Plus / Minus

                                                                        
Query: 93   ttataataggaaaatactgaaagagagcacgtggattcatacactagactaacgcggtaa 152
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1036 ttataataggaaaatactgaaagagagcacgtggattcatacactagactaacgcggtaa 977

                                                                        
Query: 153  tggaacacgggaatgaaaaattaatgtatgggtagagaacactagactccaggaggagag 212
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 976  tggaacacgggaatgaaaaattaatgtatgggtagagaacgctagactccaggaggagag 917

                                                                        
Query: 213  tttccttgaaactcttttgcctcatgagtgacttttaaacctttcggcttgtccagctga 272
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916  tttccttgaaactcttttgcctcatgagtgacttttaaacctttcggcttgtccagctga 857

                                                                        
Query: 273  ctcgaccagagactgtagcaatggagaatctcttacaagctgtgtctacataggactgat 332
            ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 856  ctcgaccagagaccgtagcaatggagaatctcttagaagctgtgtctacataggactgat 797

                                                                        
Query: 333  aaccagtccttgcccttggaggaaatcttggcctttcctcatactttccacatgtgtaat 392
            |||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct: 796  aaccagtccttgtccttggaagaaatcttggcctttcctcatacttcccacatgtgtaat 737

                                                                        
Query: 393  gaattctcagtttatacaccagcagtccttgttgctatcttaccacctttagtaagcgaa 452
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736  gaattctcagtttatacaccagcagtccttgttgctatcttaccacctttagtaagcgaa 677

                                                                        
Query: 453  cattaacaaaagccttgtacaacctcagtgaagtcaccgaaagatttttcaataagtcac 512
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676  cattaacaaaagtcttgtacaacctcagtgaagtcaccgaaagatttttcaataagtcac 617

                                                                        
Query: 513  tgcactgtctccagctaaaaacagtttaggccacttgtctcctttgttgaatagaatcag 572
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616  tgcactgtctccagctaaaaacagtttaggccacttgtctcctttgttgaatagaatcag 557

                                                                        
Query: 573  ctatgatcctcctctgtggtttgtctcatctttctatataatctcagttacatctctaaa 632
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556  ctatgatcctcctctgtggtttgtctcatctttctatataatctcagttacatctctaaa 497

                
Query: 633  agat 636
            ||||
Sbjct: 496  agat 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space:   642276
Effective search space used:   642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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