BAC Information

Click to search

BAC

Clone NameMSMg01-264C09
Chromosome18 (Build37)
Map Location 46,076,970 - 46,251,532
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC626309, LOC225457, LOC100042900, Kcnn2
Downstream geneTrim36, LOC100042905, Pggt1b, Ccdc112, EG225468, LOC100042916, Mospd4, LOC100042204, Fem1c, Ticam2, Eif1a, LOC100042226, Cdo1, Atg12, Ap3s1, LOC100042950, 4833403I15Rik, LOC666798, Gm949, LOC100042241, Commd10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264C09.T7 (MSMg01no264_c09.b1)MSMg01-264C09.TJ (MSMg01no264_c09.g1)
ACCAG405776AG405777
length685770
length of high quality
(start - end)
214 (399 - 612)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no264_c09.b1 PHD_FILE: MSMg01no264_c09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:15 2005CHROMAT_FILE: MSMg01no264_c09.g1 PHD_FILE: MSMg01no264_c09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,251,319 - 46,251,532)(46,076,970 - 46,077,255)
sequence
NTACTATTTTCAAAGGAGCGCGGAATTCTATTCTTGCANTAGGTTAACAT
TCTTTTAGGTAGGGTCAAACATATTGAGATAGTTTGAAGTGCTTTAGAGT
CTGCATCTAAATGATGCACTTGGTGTGGGGTGAGCATCTAAATGATGCAC
ACGGTGTGGGGTGACTGTTCAGAGGGGGGGGTGTGAAGACAAGAACATGA
CCAAGTGTTGGATGGATTATAGAGACAACAGCTCCTTCAAGTTCAGGAAC
CAGACTAGTGCAGAAAGACTTTTGGAAAAGGATGTGCTTCAGTTGTGTGG
CAAGAGGGACCCAATAAATGGTTCTCCTTTTTTATTACCACTCTGCACCC
CCCTTTGATAGTTCCTGCAAATTTAGGAGAGAAACATGCTTCTTAGAGTC
CTTAGTAAAGAACAAGTAAAACAAAACTGTATCAGTCTTCTTTGCATTGC
TATAACAAAAGATCCATGCTGAAAGGTCATGACGAGGTGACCCTATCTTG
TCAGATTCTGGTGAGAGCCTCTTGGGTTGAATTATAACAGAGTAGAGAAA
GAGAAAAGGATTCAAGAAAGGCTGAGATTATAGGATGGCCTTGCTTTTGT
TGTAAAGTTACTATTATTTATTTACTTATTTTAAATAAGAGTGTACTGTA
GCTGTCTTCAGGCACCCCAGAAAAGGCATCGGGTC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTAACTCTCCATCACTTACTTCC
TTACTTTTTCTCTCTCCTTTTTTTTCCTTTGAGAAAGCAGAGCTTCCAGG
CATCAGGCTGAGCAGCATCTGTAATTGCCCAGAACAAGATTCTGAGAGGT
GAAAGGGCCAGCAGTGCAAAGAGCCACCATCTGAGTTCTGGTTACCACAG
CTCTAGCCTGAGGCAAACTGTAGCTTTATCACCCCACTCAGGGGCCACCC
GGCTCATCTCAGCTTCCCTGAACCCCTCACTCCTCTTAGAATCAGCAAGT
TGGGCTTCACAGTTTTTTTGTCCTCTCCCCCCCGTAATTGAGCATGGGAC
AAGTCACTTTCTGCCCCTCAAGTTTTTCCCAAGGAGAGCAGAAGGCCAGG
TGATGTTCGAGGGTCCGGTGTGGGCACCTTGGAAAGCAGACCCGAGTTCA
GCTCACCCTATACCACCTACCAGTTCAGCCTGAAGAATCTTTGTTTTCCC
AGCAGCATTTGGAATACTTCTTTATACAGAGTAATGTGCTTTCTTGATTG
GGCCACTAGTCGAATGAAAGGAAGTCATTCTGTAATCTTCCTAGATAGAG
GCTGGTGCCCAGTAGCTGAAGAAACAGTGAGAGTCTCCAGTAAATGACAG
CTTTGTACTTCTCCATGGTGTATAACACTGTGTGATATTAATGAGGAATT
ATGTCTTCCTCCCAAACAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_c09.b1 MSMg01no264_c09.b1 CHROMAT_FILE:
MSMg01no264_c09.b1 PHD_FILE: MSMg01no264_c09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:15 2005
         (214 letters)



>mm_chr18_46251119_46251732
          Length = 614

 Score =  391 bits (202), Expect = e-113
 Identities = 211/214 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccttagtaaagaacaagtaaaacaaaactgtatcagtcttctttgcattgctataacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 tccttagtaaagaacaagtaaaacaaaactgtatcagtcttctttgcattgctataacaa 355

                                                                       
Query: 61  aagatccatgctgaaaggtcatgacgaggtgaccctatcttgtcagattctggtgagagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 aagatccatgctgaaaggtcatgacgaggtgaccctatcttgtcagattctggtgagagc 295

                                                                       
Query: 121 ctcttgggttgaattataacagagtagagaaagagaaaaggattcaagaaaggctgagat 180
           | |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 294 cccttgggttgaattataacagagtagagaaacagaaatggattcaagaaaggctgagat 235

                                             
Query: 181 tataggatggccttgcttttgttgtaaagttact 214
           ||||||||||||||||||||||||||||||||||
Sbjct: 234 tataggatggccttgcttttgttgtaaagttact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 614
Length adjustment: 9
Effective length of query: 205
Effective length of database: 605
Effective search space:   124025
Effective search space used:   124025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no264_c09.g1 MSMg01no264_c09.g1 CHROMAT_FILE:
MSMg01no264_c09.g1 PHD_FILE: MSMg01no264_c09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:15 2005
         (287 letters)



>mm_chr18_46076770_46077456
          Length = 687

 Score =  538 bits (278), Expect = e-157
 Identities = 284/286 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttaactctccatcacttacttccttactttttctctctccttttttttcctttgagaaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 201 cttaactctccatcacttacttccttactttttctctctccttttttttaatttgagaaa 260

                                                                       
Query: 61  gcagagcttccaggcatcaggctgagcagcatctgtaattgcccagaacaagattctgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcagagcttccaggcatcaggctgagcagcatctgtaattgcccagaacaagattctgag 320

                                                                       
Query: 121 aggtgaaagggccagcagtgcaaagagccaccatctgagttctggttaccacagctctag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggtgaaagggccagcagtgcaaagagccaccatctgagttctggttaccacagctctag 380

                                                                       
Query: 181 cctgaggcaaactgtagctttatcaccccactcaggggccacccggctcatctcagcttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctgaggcaaactgtagctttatcaccccactcaggggccacccggctcatctcagcttc 440

                                                         
Query: 241 cctgaacccctcactcctcttagaatcagcaagttgggcttcacag 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctgaacccctcactcctcttagaatcagcaagttgggcttcacag 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)