BAC Information

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BAC

Clone NameMSMg01-264I12
Chromosome18 (Build37)
Map Location 30,844,118 - 30,844,473
singlet/doubletsinglet
Overlap genenone
Upstream genePik3c3, LOC666094, LOC666100, EG666111, EG666114, LOC433168
Downstream geneRit2, EG666130, Syt4, LOC383420, Slc25a46, Sap130
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264I12.T7 (MSMg01no264_i12.b1)MSMg01-264I12.TJ (MSMg01no264_i12.g1)
ACCAG406052AG406053
length716834
length of high quality
(start - end)
335 (382 - 716)291 (124 - 414)
definitionCHROMAT_FILE: MSMg01no264_i12.b1 PHD_FILE: MSMg01no264_i12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:44 2005CHROMAT_FILE: MSMg01no264_i12.g1 PHD_FILE: MSMg01no264_i12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCATTCATCCCTTATTTTAATTAACCTCCCAGTCCTCTTTTCTCC
TTAATGTCACCCACCTTCCTCCCTGCTTAAACTTTCCCACCCTTCTATTG
ATAAATAACACATGCCTGGGAAGTCATAGACCCAGAAAAAGAGTTACTAA
TGTTGAATTAAATTGACATAATAACAAACTGCCTTTTAAGTATGTGTTCA
TACTCAGAGACAAAAGCTTCTCTTAGCATTAGACAGAGAAGTCTCCCCTT
TTCATGAACACTGGTGTATGCAGTGGCACATGGCTTCCCAAGATGCTGAG
AATAATTTATGTTTGAGCCCCCACCCCTCACTAAGACATTATAACACACC
CTCTAGGCCTCAGGAACCATTTTAGAACTTGTGAGAGATGAATGTAAAAC
CTAGAAGATGCAGAGAAGGGCATTAACAATTGTGACAATTGTGAATTCAC
CACAGGTGCAGTTTCCTGCACTGTTTGCACAGACAAGCCCTGTCCATAAC
TAATTATAGTCAGGGAAGGATACATGGGACATTGTCCTTTACTGCTGAAC
TATTGCCTTCTGATACGTTCTAGGAGAGGAGCAGTCACTGTCTTCAGTTG
TGCCCTCACTGCTGGGCCCATCAGAATCATGATTGTATACATGACTCAGG
TTAATCTCAGCGACTC
TTAAGCTTTACTATAATACTTATTTTAAAAACGACAGGTGTNTNTTTCGT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTTGATCCAGTTAGACTTGAGCTTTGT
AAAAGGAGATAAGAATGGATCAATTTGCATTCTTCTACATGCTGACTGCC
AGTTGAGCCAGCACCATTTGTTGAAAATGCTGTCTTTTTTCCACTGGATG
GCTTTAGCTCCTTTGTCAAAGATCAAGTGACCATAGGTTTGTGGGTTCAT
TTCTGGGGTCTTCTATTCTATTCCACTGATCTACCTCCCTGCCACTGTAT
AAATACCATGAATATTTTTTTTTATCTCAATTGCTCTGTAGTACAGCTTG
AGGACAGAAATGTGATTCCTTCCCACCAACCATTTCCCCGTTGAGAATAT
TTTTTCCTATCATAGTTTTTTTTTGTTAGAAAGAAAAAACCAGACGAATT
TGGAAGTTTCTCTTTCTAACTCTATGAAAAATTAAGTTGAATCTTAGATG
AAGATTGTATTGAATCTCTAGATTGTGTTTTGTAAGAAAGCCATTTTTAC
TATATTAATCCTGCCATTTCATGAGCATGAGAGAACTTTCCATCTTTCGA
AAACTTTTTTGATTTCTTTCTTCATAAACTTTAAATTCTTGTTATATATA
TCTATACACTTGGCTTACTTTAAAGCCTATGCCAGTTATTTTACCTTACT
CTGCTGACCATTCTTTCATGTTTATTTTTTTTTCCTTTTCCTGATACCCT
TATACTCTTTTATTTCATTCTTTTATTGTAAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_i12.b1 MSMg01no264_i12.b1 CHROMAT_FILE:
MSMg01no264_i12.b1 PHD_FILE: MSMg01no264_i12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:44 2005
         (335 letters)



>mm_chr18_30843831_30844565
          Length = 735

 Score =  596 bits (308), Expect = e-175
 Identities = 334/356 (93%), Gaps = 21/356 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   taagacattataacacaccctctaggcctcaggaaccattttagaacttgtgagagatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 taagacattataacacaccctctaggcctcaggaaccattttagaacttgtgagagatga 584

                                                                       
Query: 61  atgtaaaacctagaagatgcagagaag---------------------ggcattaacaat 99
           |||||||||||||||||||||||||||                     ||||||||||||
Sbjct: 583 atgtaaaacctagaagatgcagagaagggctgagaagcagcatcctctggcattaacaat 524

                                                                       
Query: 100 tgtgacaattgtgaattcaccacaggtgcagtttcctgcactgtttgcacagacaagccc 159
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 tgtgacaattgtgaattcaccacaggtgcagtttcctgcactgtttgcacagacaagccc 464

                                                                       
Query: 160 tgtccataactaattatagtcagggaaggatacatgggacattgtcctttactgctgaac 219
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tgtccataactaattatagtcagggaaggatacatgggacattgtcctttactgctgaac 404

                                                                       
Query: 220 tattgccttctgatacgttctaggagaggagcagtcactgtcttcagttgtgccctcact 279
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 403 tattgccttctgatacgttctaggagaagagcagtcactgtcttcagttgtgccctcact 344

                                                                   
Query: 280 gctgggcccatcagaatcatgattgtatacatgactcaggttaatctcagcgactc 335
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 gctgggcccatcagaatcatgattgtatacatgactcaggttaatctcagcgactc 288


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 735
Length adjustment: 9
Effective length of query: 326
Effective length of database: 726
Effective search space:   236676
Effective search space used:   236676
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)