BAC Information

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BAC

Clone NameMSMg01-266F03
Chromosome18 (Build37)
Map Location 86,577,114 - 86,577,402
singlet/doubletsinglet
Overlap geneNeto1
Upstream geneLOC665382, LOC545269, LOC545270, LOC665402
Downstream geneCbln2, LOC100039872, LOC100039881, LOC665437, LOC435580, LOC546719, LOC383318
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-266F03.T7 (MSMg01no266_f03.b1)MSMg01-266F03.TJ (MSMg01no266_f03.g1)
ACCAG407342AG407343
length722726
length of high quality
(start - end)
320 (46 - 365)292 (78 - 369)
definitionCHROMAT_FILE: MSMg01no266_f03.b1 PHD_FILE: MSMg01no266_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:05 2005CHROMAT_FILE: MSMg01no266_f03.g1 PHD_FILE: MSMg01no266_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTCATCTTTCAAAAACTTTTAACATGAAGGGATGCTGAATTTTGT
CAAATGCTTTTTCAGCATCTAATAAAATGATGTACTGGCTAGTTTTGTGT
CAACTTGACACAGCTGGAGTTATCACAGAGAAAGGAGCTTCAGTTGAGGA
AATGCCTCCATGAGATCCAACTGTAAGGCATTTTCTCAATTAGTGATCAA
GGGGGAAGGGCCCCTTGTGGGTGGGACCATCTCTGGGCTGGTAGTCTTGG
TTCTATAAGAAAGCAGGCTGAGCAAGCCAGGTGAGGCAAGCCAGTAAAGA
ACATCCCTCCATGTTTTCTGCCTCAGCTCCTGCTTCCTGACCTGCATGAG
TTCCAGTCCTGACTTCCCCGCCGATGAACAGCAGTATGGAAGTGTAAGCC
GAATAAACCCTTTCCTCCCCAACTTGCTTCTTGGTCATGATGTTTGTGCA
GCCATAGAAACCCTGACTAAGACAAATGATCATGTGGGGTTTTTTCCCTT
TGATTTTGTTTATGCGGATTGCAAATCATCTTTATATAATTTACAATAAC
ATACATTCTCTGATTTAGCTACCACATTTAATAGACTCTGTTCCTCATGT
TACTCACTGTATTACACATTATATTGCCACTTTGATCTGCTGTTTTCCCC
TTTATCCATACCCTTTTATCTC
CGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAGCCCAGACACTAGGGCCAG
CAGGAGCTCAAGATGAAAAGGCTATTTATTTTATTTTTGAAGTGAGTAAA
AAAGAAAGTCAGACAGTCAGATCTTAGGAAATAGAAACAATTTTGGGGCT
GAGTGAAGACACAATTTAGCATGCAGGCAAGGAAAGATGGAAGCAGGAAG
ACAGAAAGAAAGGAGGGGAGATGACTATAATAGGAGTTTGAGTTCTAAAG
CAGCTCTGGAAAATTTGATTCACACCATAGTGATAAAACGCCAAGTACCT
TAGCTCAGTTATGTTATTTGTAGCTACCACGCCACCTTGGCATCAAGGCT
TACAGAATCCCCTTGGGTTAACCCATCAGCTCCTAATTTGGATATGCAGG
CAACTCAGCATGTAGGAAACATTACACTCTTAGATAATCCTGAAATCCTG
AAAGACTGGAAATGCATCCAGGTGACAATGTGATACAGAAGAGAAGTTGC
CTGGCCTTTCTTCAGTTTATTTCTTCCTGTATACATTTTGTGACTATCAT
CAGAAATGACTATAACTCTTCCATTGTGACTTTGGTCCAAATAAACTATT
TAACAAAAGCAATGGGACACAGGACTAGTTTTTTCTTCATAACTTTAACA
CATACAAATACCACTAAAAGCAAGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no266_f03.g1 MSMg01no266_f03.g1 CHROMAT_FILE:
MSMg01no266_f03.g1 PHD_FILE: MSMg01no266_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:05 2005
         (292 letters)



>mm_chr18_86576914_86577605
          Length = 692

 Score =  551 bits (285), Expect = e-161
 Identities = 288/289 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaagcccagacactagggccagcaggagctcaagatgaaaaggctatttattttatttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 aaaagcccagacactagggccagcaggagctcaagatgaaaaggctatttattttatttt 430

                                                                       
Query: 61  tgaagtgagtaaaaaagaaagtcagacagtcagatcttaggaaatagaaacaattttggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tgaagtgagtaaaaaagaaagtcagacagtcagatcttaggaaatagaaacaattttggg 370

                                                                       
Query: 121 gctgagtgaagacacaatttagcatgcaggcaaggaaagatggaagcaggaagacagaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gctgagtgaagacacaatttagcatgcaggcaaggaaagatggaagcaggaagacagaaa 310

                                                                       
Query: 181 gaaaggaggggagatgactataataggagtttgagttctaaagcagctctggaaaatttg 240
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gaaaggaggggagatgacgataataggagtttgagttctaaagcagctctggaaaatttg 250

                                                            
Query: 241 attcacaccatagtgataaaacgccaagtaccttagctcagttatgtta 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 attcacaccatagtgataaaacgccaagtaccttagctcagttatgtta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)