BAC Information

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BAC

Clone NameMSMg01-268J23
Chromosome18 (Build37)
Map Location 64,313,016 - 64,313,331
singlet/doubletsinglet
Overlap genenone
Upstream gene9030411M15Rik, LOC627792, Txnl1, Wdr7, LOC629436, LOC667773
Downstream geneSt8sia3, LOC433193, Onecut2, LOC667783, LOC100043304, Fech, Nars, Atp8b1, LOC629480, Nedd4l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268J23.T7 (MSMg01no268_j23.b1)MSMg01-268J23.TJ (MSMg01no268_j23.g1)
ACCAG408983AG408984
length745744
length of high quality
(start - end)
325 (46 - 370)292 (75 - 366)
definitionCHROMAT_FILE: MSMg01no268_j23.b1 PHD_FILE: MSMg01no268_j23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:56 2005CHROMAT_FILE: MSMg01no268_j23.g1 PHD_FILE: MSMg01no268_j23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACAGCGAACCTCAGAGGTTCCATGAGGCACCACTGTTTCTAGTAG
TTTCCCATCTGCCCAAGGTGTTCCACCAAAGCATTAGAACACAAGCTCAC
TTACCAACCAGTCATACATTTGACTTTATGATGGAATCACAGTGGACCGT
CAAACTGATTAACATATTAGTTCATTACGATGTTGAAAATGCCTTGGTAA
TCAGAGAAGACAGTCTCAAAGCAAGCACTCTGCTGCTACCTTGGCTTGAC
TCTCTCACCCTTCCCCAGGAGGACTCTGCATGTCCCTGATGTGAAGGCAA
AACTCCATACTTTTTTGTATTTTTGATATCCCCCCGCCCAACCCTGGAAG
GGTTGTAGGAGACTAGGTCTCTCTTGAACTCTGTGTGAGCTGCAAGGAGC
TTTCTATCTGCCAAGGCCAATAGCCAATGGAACTGAAGTCCAGGCATGGA
TTTGTACTTTGCCTTAGTTAGGATTCCTCTTGCTGCAAAGAGATACCATG
CCCTCAGCAAGTCTTACAAAGCACTTCACTGGGGCTGGCTTACAGGTTCA
GAGGTCACAGAGTCCATTGTCATCATGAAGGGACGAGTGGTGGTTTGCAG
GCAGATGTCGGATAGGTAGCTGAGAGTTCTGCAGGAAGCAAGATCGAGCC
ACCAGCCGTGATTTGAGCTTCTGAAACTTCAAAACCCATCCCCAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGA
GAAGCACCTGAAAAAATATTCAACATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTAGAGAAAGAGGAAT
ACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAAT
CAGTCTGGCGGTTCCTCAGGAAATTGGACATAGTACTACCGGAGGATCCA
GCAATACCTCTCTTGGTCTTATATCCAGAACACGCCCCAACTGGAAAGAA
GGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAA
GCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATG
TGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATT
TATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTG
AGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGT
GGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATACAATTTGTT
AAACACATGAAACTCAAGAAGAATGAAGACTGAAGTGTGGACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_j23.b1 MSMg01no268_j23.b1 CHROMAT_FILE:
MSMg01no268_j23.b1 PHD_FILE: MSMg01no268_j23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:56 2005
         (325 letters)



>mm_chr18_64312811_64313533
          Length = 723

 Score =  557 bits (288), Expect = e-163
 Identities = 310/318 (97%), Gaps = 2/318 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   aattcacagcgaacctcagaggttccatgaggcaccactgtttctagtagtttcccatct 65
           ||||||||| ||||||||||||||||||||||| ||||||||||||||| ||| ||||||
Sbjct: 521 aattcacagggaacctcagaggttccatgaggctccactgtttctagtatttttccatct 462

                                                                       
Query: 66  gcccaaggtgttccaccaaagcattagaacacaagctcacttaccaaccagtcatacatt 125
           |||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 461 gcccaag--gttccaccaaagcattagaacaaaagctcacttaccaaccagtcatacatt 404

                                                                       
Query: 126 tgactttatgatggaatcacagtggaccgtcaaactgattaacatattagttcattacga 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tgactttatgatggaatcacagtggaccgtcaaactgattaacatattagttcattacga 344

                                                                       
Query: 186 tgttgaaaatgccttggtaatcagagaagacagtctcaaagcaagcactctgctgctacc 245
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 343 tgttgaaaatgccttggtaatcagagaaggcagtctcaaagcaagcactctgctgctacc 284

                                                                       
Query: 246 ttggcttgactctctcacccttccccaggaggactctgcatgtccctgatgtgaaggcaa 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 ttggcttgactctctcacccttccccaggaggactctgcatgtccctgatgtgaaggcaa 224

                             
Query: 306 aactccatacttttttgt 323
           ||||||||||||||||||
Sbjct: 223 aactccatacttttttgt 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 723
Length adjustment: 9
Effective length of query: 316
Effective length of database: 714
Effective search space:   225624
Effective search space used:   225624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)