Query= MSMg01no268_p08.b1 MSMg01no268_p08.b1 CHROMAT_FILE:
MSMg01no268_p08.b1 PHD_FILE: MSMg01no268_p08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:19 2005
(667 letters)
>mm_chr18_71118971_71120036
Length = 1066
Score = 1187 bits (614), Expect = 0.0
Identities = 651/664 (98%), Gaps = 3/664 (0%)
Strand = Plus / Plus
Query: 5 gaattcacaagtttaacgcccccattccagaagcaaatttttatggtttatggcatatgt 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacaagtttaaagcccccattccagaagcaaatttttatggtttatggcatatgt 264
Query: 65 gcatctcctaggtctcatattctttatacttcttcttcagtgctatttggtaagccttgg 124
|||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 265 gcatctccaaggtctcatattctttatacttcttcttcagtgctgttaggtaagccttgg 324
Query: 125 aggggaagtatcaattcacaaagaaattagtattaatttatccagtgttagattattatc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aggggaagtatcaattcacaaagaaattagtattaatttatccagtgttagattattatc 384
Query: 185 agcagaacttaattgagaatctgtagcatataaagtattacatgcagtacttacctggga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agcagaacttaattgagaatctgtagcatataaagtattacatgcagtacttacctggga 444
Query: 245 cataaacttaaggaaagttacagggagcttaaaatgaacttttgataaacaacatcacaa 304
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cgtaaacttaaggaaagttacagggagcttaaaatgaacttttgataaacaacatcacaa 504
Query: 305 gggaaattcataaataaacatcttgatgaaattagacaagtacagctacttacatttaga 364
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 505 gggaaattcataaataaacatcttgatgaaattagacaagtaccgctacttacatttaga 564
Query: 365 gagatgagttagagagtaggctagtagttacaaggtagtatgatgctctcgttagtggaa 424
|||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 565 gagatgagctagagagtaggctagtagttacaaggtagtatgatgctc--gttagcggaa 622
Query: 425 tgatggataggatttgatggagaggcgtgcctgagaaaaggcatggagcctttagcatga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tgatggataggatttgatggagaggcgtgcctgagaaaaggcatggagcctttagcatga 682
Query: 485 ggagctggtgaatatgtgaacctagatcatggtgcacacgataaaagcaaaggacagaaa 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ggagctggtgaatatgtgaacctagatcatggtgcacacgataaaagcaaaggacagaaa 742
Query: 545 atccccagaaaaa-gttttaggaaaaggtaagagttaaaattttaagatgcttaatattt 603
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 743 atccccagaaaaaagttttaggaaaaggtaagggttaaaattttaagatgcttaatattt 802
Query: 604 agagaaagcacccaaggagctgaaggggtctgcaaccttataggtagaacaacaatatga 663
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 803 agagaaagcacccaaggagctgaaggggtctgcaaccttataggtggaacaacaatatga 862
Query: 664 acta 667
||||
Sbjct: 863 acta 866
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1066
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1056
Effective search space: 693792
Effective search space used: 693792
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no268_p08.g1 MSMg01no268_p08.g1 CHROMAT_FILE:
MSMg01no268_p08.g1 PHD_FILE: MSMg01no268_p08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:19 2005
(649 letters)
>mm_chr18_71219106_71220154
Length = 1049
Score = 1027 bits (531), Expect = 0.0
Identities = 621/651 (95%), Gaps = 4/651 (0%)
Strand = Plus / Minus
Query: 1 cattaaaaatcaaaccacatatagttattatgtatgactataaagcaaattaaaaacgta 60
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 849 cattaaaaatcaagccacatatagttattatgtatgactatgaagcaaattaaaaacata 790
Query: 61 agaattattccttaaagacaagaagtatttttttaaaactttaaatatggtttaatgttt 120
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 789 agaattattcctgaaagacaagaagtatttttttaaaactttaaatgtggtttaatgttt 730
Query: 121 agaattggattaaaagtatctttctataaaaagaaatgtaagaatgtagaagtgaacaaa 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 729 agaattggattaaaagtatctttctataagaagaaatgtaagaatgtagaagtgaacaaa 670
Query: 181 gggaaaatgtgctgcttgcttcatgtgtttacgtgtgcatgtgtgcacatatgtgtatct 240
|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 669 gggaaactgtgctgcttgcttcatgtgtttacatgtgcatgtgtgcacatatgtgtgtct 610
Query: 241 gccagttttgtttgtatacatgtctttttaatatttaagtgtctaatgttcatgtgtata 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 609 gccagttttgtttgtatacatgtctttttaatatttaagtgtctaatattcatgtgtata 550
Query: 301 tgcatgtgtcatttgttaaatatttaatattactaatgtttaaacttatataaaagtgaa 360
|| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 549 tgaatgtggcatttgttaaatatttaatattactaatgttgaaacttatataaaagtgaa 490
Query: 361 caataggtatttaaaatgcataatgaaaagtaaaaataaaatttatcatacctacatcaa 420
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 caaaatgtatttaaaatgcataatgaaaagtaaaaataaaatttatcatacctacatcaa 430
Query: 421 cagagaaatt-aaaaaatgattaccagaattgtaagagggacagaaaagaaagtgcaatt 479
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 429 cagagaaatttaaaaaatgattaccagaattgtaagagggacagaaaagaaagtacaatt 370
Query: 480 cataaaacaatgtatattcttgtatgatcattaaaaaaaaagtaaacagaattaaggagc 539
|||||||||| ||||||||||||| ||||| |||| ||| ||||||||||||| |||||
Sbjct: 369 tataaaacaatttatattcttgtataatcat-aaaacaaaggtaaacagaattagggagc 311
Query: 540 atacaact-tttacatattaatatataacccatatattgtgtattccttcatatatcctt 598
|||||| | ||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 310 atacaa-tgtttacatattaatatataacccaaatattgtgtattccttcacatatcctt 252
Query: 599 gctagtgtatggatgtggacatgcaacttatgactcagacattacgtttta 649
|||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct: 251 gctagtgtatggatgtggacatacaacttatgactcagacattaagtttta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space: 663921
Effective search space used: 663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
