Query= MSMg01no270_k24.b1 MSMg01no270_k24.b1 CHROMAT_FILE:
MSMg01no270_k24.b1 PHD_FILE: MSMg01no270_k24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:24 2005
(680 letters)
>mm_chr18_63876540_63877618
Length = 1079
Score = 1261 bits (652), Expect = 0.0
Identities = 670/676 (99%), Gaps = 1/676 (0%)
Strand = Plus / Plus
Query: 5 gaattcctattaagtttactacaccaccagattattttagtcatttgattaattgttttg 64
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctattaagcttaatacaccaccagattattttagtcatttgattaattgttttg 264
Query: 65 ctcttgacctttccatgcatatatgaatattttctttttgtttcagagactcctgtggtt 124
|| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 265 cttttgacctttccatgtatatatgagtattttctttttgtttcagagactcctgtggtt 324
Query: 125 tggttcatttcgattcactataataatttttgggatatatttcttttcaagcactagatg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tggttcatttcgattcactataataatttttgggatatatttcttttcaagcactagatg 384
Query: 185 ataatgttggcaatatgaagcctggagaattaataaataaattgactagttgaatgctgg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ataatgttggcaatatgaagcctggagaattaataaataaattgactagttgaatgctgg 444
Query: 245 tgcttgattgaagagtgacaccccctaaatttatattgccccctttctactttctagtga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgcttgattgaagagtgacaccccctaaatttatattgccccctttctactttctagtga 504
Query: 305 tagcattggctcatcagttcagagaagttcagatttagattcttgtggtctgatgattaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tagcattggctcatcagttcagagaagttcagatttagattcttgtggtctgatgattaa 564
Query: 365 atctgttttaaaccctgtgatctagtgactaagtccagttaaatctagactaattgactc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atctgttttaaaccctgtgatctagtgactaagtccagttaaatctagactaattgactc 624
Query: 425 atttctcatttttaaccagctatagagagataggtatatccatagaagtatttgatgtaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atttctcatttttaaccagctatagagagataggtatatccatagaagtatttgatgtaa 684
Query: 485 tttagtgatgtacgtaaggcacattgtcctttatttcatattatttcactagtatttctg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tttagtgatgtacgtaaggcacattgtcctttatttcatattatttcactagtatttctg 744
Query: 545 gtggcttttctaaagtttcacttttattttattagacttttttttttaatgactaatggg 604
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 745 gtggcttttctaaagtttcacttttattttattagacttttttttt-aatgactaatggg 803
Query: 605 atagtttgaagaactccaaatcataaatgaacaaggaatgaagacaatataaaatagtgt 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 atagtttgaagaactccaaatcataaatgaacaaggaatgaagacaatataaaatagtgt 863
Query: 665 ctcttataaaaattgg 680
||||||||||||||||
Sbjct: 864 ctcttataaaaattgg 879
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1079
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1069
Effective search space: 716230
Effective search space used: 716230
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no270_k24.g1 MSMg01no270_k24.g1 CHROMAT_FILE:
MSMg01no270_k24.g1 PHD_FILE: MSMg01no270_k24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:24 2005
(293 letters)
>mm_chr18_64021477_64022169
Length = 693
Score = 557 bits (288), Expect = e-163
Identities = 291/292 (99%)
Strand = Plus / Minus
Query: 1 aattgagcttcccttcacattgtaacaatatgtaaaacatgtcggacattacaaacatac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 aattgagcttcccttcacattgtaacaatatgtaaaacatgtcggacattacaaacatac 433
Query: 61 cactagaatttttaaagctagcacattattttaacactggtcatagaacagtaatttttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 cactagaatttttaaagctagcacattattttaacactggtcatagaacagtaatttttg 373
Query: 121 tcagaaatttgtggtatgcaatagagtccaagtgacactcataataatatgaatgtttta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 tcagaaatttgtggtatgcaatagagtccaagtgacactcataataatatgaatgtttta 313
Query: 181 taaatctgatatgaattaaaatgtactaaaaattcgtttgggaaattcagaaatatgttt 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 312 taaatctgatatgaattaaaatgtactaaaaattcatttgggaaattcagaaatatgttt 253
Query: 241 ttggtagatagaaatagtagaaatagatattaaatgtttttctttagtttaa 292
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ttggtagatagaaatagtagaaatagatattaaatgtttttctttagtttaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space: 194256
Effective search space used: 194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
