Query= MSMg01no270_l24.b1 MSMg01no270_l24.b1 CHROMAT_FILE:
MSMg01no270_l24.b1 PHD_FILE: MSMg01no270_l24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:29 2005
(319 letters)
>mm_chr18_17923761_17924484
Length = 724
Score = 493 bits (255), Expect = e-144
Identities = 303/321 (94%), Gaps = 7/321 (2%)
Strand = Plus / Plus
Query: 5 gaattctaggaaaataaaaattgcctaggttatttatttctttctaactgtaaactttca 64
||||||||||||||||||||||||||||| | ||||||||||| ||||| ||||||||||
Sbjct: 205 gaattctaggaaaataaaaattgcctaggatctttatttctttttaactataaactttca 264
Query: 65 tcttttaatggaatttcacccatttgatgtgggaaggatatatattcgatctttgtgcaa 124
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 265 tcttttaatggaatttcacccatttgacgtgggaaggatatatattcaatctttgtgcaa 324
Query: 125 cactaatgtattatgattttatttttataactgtccaaggcatct----gtaaagacac- 179
|| |||||||||||||||||||||||||||||||| || |||||| ||||||| ||
Sbjct: 325 cattaatgtattatgattttatttttataactgtctaaagcatctatctgtaaagatact 384
Query: 180 cgtataatctcactaataaaaagggggg-aagcctttaaaaaaaagaatcgttttttagc 238
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 385 c-tataatctcactaataaaaagggggggaagcctttaaaaaaaagaatcgttttttagc 443
Query: 239 aaccctatgaattgtaacttgacaaccacaaaaatgctctatatggctaatgctaaggca 298
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 444 aaccctatgaattgtaacttgacagccacaaaaatgctctatatggctaatgctaaggca 503
Query: 299 attaatttccactcagccttg 319
|||||||||||||||||||||
Sbjct: 504 attaatttccactcagccttg 524
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 724
Length adjustment: 9
Effective length of query: 310
Effective length of database: 715
Effective search space: 221650
Effective search space used: 221650
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no270_l24.g1 MSMg01no270_l24.g1 CHROMAT_FILE:
MSMg01no270_l24.g1 PHD_FILE: MSMg01no270_l24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:29 2005
(689 letters)
>mm_chr18_18063913_18065001
Length = 1089
Score = 619 bits (320), Expect = 0.0
Identities = 323/324 (99%)
Strand = Plus / Minus
Query: 1 actcctgttcccacctcaccccaccaatatctgattatgttccccttttactagatttta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 actcctgttcccacctcaccccaccaatatctgattatgttccccttttactagatttta 265
Query: 61 ataatgacccacatgaatttgtaacattgtaggatatatgtatgagtactctttgaacaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ataatgacccacatgaatttgtaacattgtaggatatatgtatgagtactctttgaacaa 205
Query: 121 tatttgaccaagccagctcagtcagtcagcaggttgtccagctcaggagcaagaattaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 tatttgaccaagccagctcagtcagtcagcaggttgtccagctcaggagcaagaattaaa 145
Query: 181 aagaaaaacaacaattagataacattgttgcatgaccccagccagttctgaggctgaggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 aagaaaaacaacaattagataacattgttgcatgaccccagccagttctgaggctgaggt 85
Query: 241 gggtttatttttttccccaatctgttttataccattttcattgcagtaataaggtcagtt 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84 gggtttaattttttccccaatctgttttataccattttcattgcagtaataaggtcagtt 25
Query: 301 ctaggttgagaaacaagacaaaaa 324
||||||||||||||||||||||||
Sbjct: 24 ctaggttgagaaacaagacaaaaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space: 732641
Effective search space used: 732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
