BAC Information

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BAC

Clone NameMSMg01-271A06
Chromosome18 (Build37)
Map Location 50,940,711 - 50,941,024
singlet/doubletsinglet
Overlap genenone
Upstream geneDmxl1, Tnfaip8, Hsd17b4, LOC626721, LOC667233, Gm93, Hdhd1a, LOC100042373
Downstream geneLOC100042385, Prr16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-271A06.T7 (MSMg01no271_a06.b1)MSMg01-271A06.TJ (MSMg01no271_a06.g1)
ACCAG410689AG410690
length745743
length of high quality
(start - end)
318 (44 - 361)249 (382 - 630)
definitionCHROMAT_FILE: MSMg01no271_a06.b1 PHD_FILE: MSMg01no271_a06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:48 2005CHROMAT_FILE: MSMg01no271_a06.g1 PHD_FILE: MSMg01no271_a06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:09:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTTAAATTTTGTAATAAGTTCATACCAGGGCAAGTGTTACCAGAAAA
CATTCATTCAGTATGAGGAATGCTGGCCTCCTTTTGGAGACTCCTCCAAC
AAGGACTAGCGGTCTTCTATAAATGACACAACAGCCAGAGTGCTTCTTTT
CTTTTCCCCAATGTATGGAACAGAGAAAAGGGAACATTGCCTTTCTATAG
ATCTAAATCTGTCAACTACTTTGAAACTTTTCTTTGGTTGCTTGTTGTAG
CTGTGACTTCTTTTACATACCCAGAAGTTAATGGAATGCAACAGATACTT
GACTAACTGACTGAGAAGACGCATTTAAGGAATTTCCTTTTCAGAAAGAA
CATATTTTAATTTCTCAGATTTCATTAAAAATGAAAATTTGTAGGAAAAC
AATTGAACATACATTTAATTCTCACTTTAAGACTTTATTAAAAACTAAGA
TCTATAGGAAAACAAGCCAATATTCAAATAAGTGTGTCTGCATCTATGTA
GTTAGGCTCTTATAAGAAAATGTTTGGGGAGTGAAATTAGACACTTGTAG
AGAGAATATCTTATGTATTTTATGCCCGCATCACCTGTCAATATATATAT
ATGGCCTATAGGAAAGGGTAGAATAAAAGGTTGGAGATCTGGGAGGCAGA
AAGAATTCTGGGATAAAGCCAGGCATGGGAGCTTCACCTGGGATG
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGACAAGC
AAGAAGAGTGAAGACTGAAGTGTGGACACTATGTCCCTCCTTAGAATTGG
GAACAAAACACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGAGA
TGAAAGGATGGACCATGTAGAGACTGCCATATCCAGGGATCCACCCCATA
ATCAGCATCCAAACGCTGACAACATTGCATGCACTAGCAAGATTTTATTC
AAAGGACCCAGATGTAGCTGTCTCTTTTGAGACTATGCCGGGGCCTAGCA
AACACAGAAGTGGTTGCTCACAGCCCGCTAATGGATGGATCACAGGTCTC
CCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAAC
CCTATAGGTGGAACAACATTATGAACTAACTAGTACCCCGGAGCTCTTGA
CTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAA
GAGAGGCCCATTGGACACGCAAACTTTATATGCCCCAGTCCAGGGGAACG
CCAGGGCCAAGAAGGGGGAGTGGGTGGTTAGAGGAAGTAGGGGTGCTTTC
TTCAATTTTCTATCCCTCCCTTTTATTTCCAATTTCCCCCGTCCCCTTAT
TTCCTCTATTTTTTCATTCCACCCCGCATTTCCTTTATTGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no271_a06.b1 MSMg01no271_a06.b1 CHROMAT_FILE:
MSMg01no271_a06.b1 PHD_FILE: MSMg01no271_a06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:48 2005
         (318 letters)



>mm_chr18_50940507_50941224
          Length = 718

 Score =  600 bits (310), Expect = e-176
 Identities = 313/314 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttaaattttgtaataagttcataccagggcaagtgttaccagaaaacattcat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttaaattttgtaataagttcataccagggcaagtgttaccagaaaacattcat 264

                                                                       
Query: 65  tcagtatgaggaatgctggcctccttttggagactcctccaacaaggactagcggtcttc 124
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 265 tcagtatgaggaatgctggcctccttttggagactcctgcaacaaggactagcggtcttc 324

                                                                       
Query: 125 tataaatgacacaacagccagagtgcttcttttcttttccccaatgtatggaacagagaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tataaatgacacaacagccagagtgcttcttttcttttccccaatgtatggaacagagaa 384

                                                                       
Query: 185 aagggaacattgcctttctatagatctaaatctgtcaactactttgaaacttttctttgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aagggaacattgcctttctatagatctaaatctgtcaactactttgaaacttttctttgg 444

                                                                       
Query: 245 ttgcttgttgtagctgtgacttcttttacatacccagaagttaatggaatgcaacagata 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttgcttgttgtagctgtgacttcttttacatacccagaagttaatggaatgcaacagata 504

                         
Query: 305 cttgactaactgac 318
           ||||||||||||||
Sbjct: 505 cttgactaactgac 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)