Query= MSMg01no271_c16.b1 MSMg01no271_c16.b1 CHROMAT_FILE:
MSMg01no271_c16.b1 PHD_FILE: MSMg01no271_c16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:59 2005
(313 letters)
>mm_chr18_8042771_8043483
Length = 713
Score = 600 bits (310), Expect = e-176
Identities = 310/310 (100%)
Strand = Plus / Plus
Query: 4 ggaattcccaaaaagcacgtgtttccactcttttcacaagacttcaacaagcattccaaa 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcccaaaaagcacgtgtttccactcttttcacaagacttcaacaagcattccaaa 263
Query: 64 acattcagaagcaatagtattgtctctttacccaagtctctgccctgggtgtggctaatt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 acattcagaagcaatagtattgtctctttacccaagtctctgccctgggtgtggctaatt 323
Query: 124 tacgaagaaacatctgatatcagctcttccccaagagaaaagtgaacttctgtccatgtc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tacgaagaaacatctgatatcagctcttccccaagagaaaagtgaacttctgtccatgtc 383
Query: 184 agcaattgtagactgtacgctctagggatcctaaatgttaggaaatgaagtagaagaaag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agcaattgtagactgtacgctctagggatcctaaatgttaggaaatgaagtagaagaaag 443
Query: 244 aattttaaggcctttgtcaaacaagcaaggtactctgattgtggtatcctttaagtgtcc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aattttaaggcctttgtcaaacaagcaaggtactctgattgtggtatcctttaagtgtcc 503
Query: 304 aaagccaaaa 313
||||||||||
Sbjct: 504 aaagccaaaa 513
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space: 214016
Effective search space used: 214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no271_c16.g1 MSMg01no271_c16.g1 CHROMAT_FILE:
MSMg01no271_c16.g1 PHD_FILE: MSMg01no271_c16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:59 2005
(671 letters)
>mm_chr18_8179250_8180320
Length = 1071
Score = 984 bits (509), Expect = 0.0
Identities = 552/573 (96%), Gaps = 12/573 (2%)
Strand = Plus / Minus
Query: 95 tcctccaagcatctttctaaaggaactcttccattacacttcaggagatttgcctgatga 154
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1069 tcctccaagcatctttctaaa-aaactcttccattacacttcaggagatttgcctgatga 1011
Query: 155 cattaatgttgtgggtatctggagaaggttaaccataccagcctgggcagattcagctaa 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1010 cattaatgttgtgggtatctggagaaggttaaccataccagcctgggcagattcagctaa 951
Query: 215 tgtagccaagaacaacgatggttcttagccagaaagcatactcttttcaaagtacttgaa 274
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 950 tgtagccaagaacaacaatggttcttagccagaaagcatactcttttcaaagtacttgaa 891
Query: 275 acttaaatataacaacttgatggttccttaatcattccgagaagacagactgtacactaa 334
||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 890 acttaaatataacaacttgatgg-----------ttccgagaaaacagactgtacactaa 842
Query: 335 ccggaatgctaaaaagcacaacttaaaagacatcattcattttttgagatattaaaggaa 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 ccggaatgctaaaaagcacaacttaaaagacatcattcattttttgagatattaaaggaa 782
Query: 395 agctagcagtcagtccaagcaagaaagatggactaaaattcagtgacaaattagctgata 454
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 781 agctagcagtcagtccaagcaagaaagatggactaaaattcggtgagaaattagctgata 722
Query: 455 tcgtcctcttatacctgcttctggtagccatggcagaggttaccagacctgggattaata 514
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tcttcctcttatacctgcttctggtagccatggcagaggttaccagacctgggattaata 662
Query: 515 ggattgaagtttaactctgctcatattacaagctcagactgtctgcacatatgatgtgaa 574
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 661 ggattgaagtttaactctgctcatactacaagctcggactgtctgcacatatgatgtgaa 602
Query: 575 gaaatgtatgtactacataagataaggataaatgtatatcacaatataaaaacatgaagg 634
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 601 gaaatgtatgtactacataagataaggatacatgtatatcacaatataaaaacatgaagg 542
Query: 635 acagatgacacatttacatcttaaccatctata 667
|||||||||||||||||||||||||||||||||
Sbjct: 541 acagatgacacatttacatcttaaccatctata 509
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space: 701321
Effective search space used: 701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
