Query= MSMg01no271_d24.b1 MSMg01no271_d24.b1 CHROMAT_FILE:
MSMg01no271_d24.b1 PHD_FILE: MSMg01no271_d24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:05 2005
(379 letters)
>mm_chr18_71472083_71472863
Length = 781
Score = 702 bits (363), Expect = 0.0
Identities = 375/380 (98%), Gaps = 2/380 (0%)
Strand = Plus / Minus
Query: 1 actagcaagaaaaatggtcttcccttagctcgcaaatgaaacctccacaacttgaatcca 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 actagcaagacaaatggtcttcccttagctcgcaaatgaaacctccacaacttgaatcca 521
Query: 61 aaaaacat--tgtcatcctcgttctggtatttctcacccacaaggaaaacaacttttcct 118
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 aaaaacattctgtcatcctcgttctggtatttctcacccacaaggaaaacaacttttcct 461
Query: 119 tctgctctcaaagtcacacgccgtcataagcccttcaggttcaaacagcagcgtcgacag 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tctgctctcaaagtcacacgccgtcataagcccttcaggttcaaacagcagcgtcgacag 401
Query: 179 tcctcgtgaccgtgacaattgaacttgactgttgacactgataaactctccattttacaa 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tcctcgtgaccgtgacaattgaacttgactgttgacactgataaactctccattttacaa 341
Query: 239 atgaggaacccagcatatcttanatgtttcacttgtttgcatattatcatatccaataaa 298
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 340 atgaggaacccagcatatcttaaatgtttcacttgtttgcatattatcatatccaataaa 281
Query: 299 ttaccacaaatttatgtccataaaataatatccacttattttatctattgtttctgagtg 358
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ttaccacaaatttatctccataaaataatatccacttattttatctattgtttctgagtg 221
Query: 359 ccaggaagcaagaacattta 378
||||||||||||||||||||
Sbjct: 220 ccaggaagcaagaacattta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 781
Length adjustment: 9
Effective length of query: 370
Effective length of database: 772
Effective search space: 285640
Effective search space used: 285640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no271_d24.g1 MSMg01no271_d24.g1 CHROMAT_FILE:
MSMg01no271_d24.g1 PHD_FILE: MSMg01no271_d24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:05 2005
(649 letters)
>mm_chr18_71317958_71319006
Length = 1049
Score = 1102 bits (570), Expect = 0.0
Identities = 632/660 (95%), Gaps = 15/660 (2%)
Strand = Plus / Plus
Query: 1 tctagggagaagataaatggaagacttcttcaagaagggagaaaatgattctaaatctaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 tctagggagaagataaatggaagacttcttcaagaagggagaaaatgattctaaatctaa 245
Query: 61 ttttaaaatattccttgagaaaagattaatagaacatttgtatgacagccgagaataaag 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 246 ttttaaaatattccttgagaaaagattaatagaacatttatatgacagccgagaataaag 305
Query: 121 agtatttaacacaggaaaagtatcatggccaagaagccacatgccaaccttttctccaac 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 306 agtatttaacacaggaaaagtatcatgtccaagaagccacatgccaaccttttctccaac 365
Query: 181 acttcctcctaggaaaacctctgccatctctccccctgatcttcagttctcaccactttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 acttcctcctaggaaaacctctgccatctctccccctgatcttcagttctcaccactttt 425
Query: 241 tctggccacatctttgtttactcctctataccatcctacaa--taag---accaggttgt 295
|||||||| |||||||||||||||| |||||||||||| | || | ||| ||||||
Sbjct: 426 tctggccatgtctttgtttactcctccataccatcctaccaggtaggttgacctggttgt 485
Query: 296 tcttattgtattccaagtctctcttttaattttttttatatttcattatgtagctacttt 355
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tcttattgtattcaaagtctctcttttaattttttttatatttcattatgtagctacttt 545
Query: 356 tcactgaacttactacattttgttttaccaacttttgccctatgataagtatgaggtata 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 tcactgaacttactacattttgttttaccaacttttgccctatgataagtatgaggtata 605
Query: 416 aacatttaattgaattgacaatttctcttactttttaaaagttgaatat-ata------- 467
||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 606 aacatttaattgaattgacaaattctcttactttttaaaagttgaatattatatatatat 665
Query: 468 --atatatatatattgtcataactaaatattgaactcaagtcaattttctaaacacatat 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 atatatatatatattgtcataactaaatattgaactcaagtcaattttctaaacacatat 725
Query: 526 ccataatgaatctttagggttgaagaacatataaatagggcttataaatcctgggaatag 585
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 726 ccataatgaatctttagggttgaagaacacataaatagggcttataaatcctgggaatag 785
Query: 586 tacaaaagaaataaggaacaataacttgaaataaaaattgcagctcagaaagatctacgg 645
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 786 cacaaaagaaataaggaacaataatttgaaataaaaattgcagctcagaaagatctacgg 845
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space: 663921
Effective search space used: 663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
