ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTGGAATAGACTTCTTGTGTTCAAGACTTATTTCTTCTTTACTGCTAGA
GGCCACTGGACAACACTCCCTCAGACCCCTCTGATGTTCACCCCCTATCC
TCAGCAGTCAAATGGAGTAATAGTAGTGTCTTAAATACGATAATCCTGTT
AAGATTTTTGTTTCTAATTTCCAGGGGCAAACAGTCCAAAAGACAATTTC
TACATTGAAGTTTTTGTGTCCCCTTATTCATCTTCAACCCAAGCAATCCA
GCACATATACTCAAAGAACATTCCAAAACAAGGAATTTGCATAAAATCAT
CTGTGGTATTCAAATATTTTCAGATATTTAGTTGGGTTTCTTTCCATTTT
CATTCTCAAGTTCTTGTGAATTTTATGTTATCAAAGAGTCTTCTCAGTCT
TAGCTAGAAGCGCCATGGAATATTCCGTGACTGAATGCTTGCTCAAGCTC
ACACAGAGGTATCAAAACTTGAAAGATACATAAGTGGGCTTCACTCACTC
TCTGCTTGGAAGGTAGACTGAGGAAGGCAGCACAGAGTTGGCCATAACTC
AGCAGTTGGTGACAGTGGGCACAGTTCATCTAAGTAACTAACTTGGGTTC
TCAGACAGCACAGCAGGATAAGGAACAAATCCCTCTTCTAAGTCAGCTTC
CTGGGACCCAGGCAACAACAGATGCTTTCCTCCTCAATGATGCTTC

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCTGAGA
AGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGAGAAATGCAAATC
AAAACAACCCTGAGATTTCATCTCACACCAGTCAGAATGGCTAAGATGAA
AAATTCAGGTGACAGCAGATGCTGACAAGGATGTGGAGAAAGAGGAACAC
TCCTCCATTGTTGGTGGGATTGCAAGCTTTTCCCCTCTGGAAATCAGTCT
GGCGGTTCCTCAGAAAATTGGACATAATACTACTGGAGGATCCCGCAATC
CCTCTTCTGGGCATATATCCAGAAGATGTCCCAACCGCTAAGAAGGACAC
ATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGA
AAGTACCCAGATGCCCCTCAACAGAGGAATGGATATAGAAAATGTGGTAC
ATTTACACAATGGAGTACTACTCAACTATTAAAAAGAATGAATTTATGAA
ATTCCTAGGCAAATGGTTGTACCTGGAGGGCATCATCCTGAGTGAGGTAA
CCCAATCACAAAAGAACTCAAATGATGTGTACTCAGCGATAAGTGGATAT
TAGTCCAGATACTTAGTATAGCGAGATTTAAGATACAATCTTGCTAATCA
CTTGATACCGAAGAAGAACGAATACCAAAGTGTGTACAN

Query= MSMg01no271_k01.b1 MSMg01no271_k01.b1 CHROMAT_FILE:
MSMg01no271_k01.b1 PHD_FILE: MSMg01no271_k01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:32 2005
         (660 letters)



>mm_chr18_41455823_41456879
          Length = 1057

 Score = 1201 bits (621), Expect = 0.0
 Identities = 647/657 (98%), Gaps = 3/657 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctggaatagacttcttgtgttcaagacttatttcttctttactgctagaggcca 63
           |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctggaacagatttcttgtgttcaagacttatttcttctttactgctagaggcca 263

                                                                       
Query: 64  ctggacaacactccctcagacccctctgatgttcaccccctatcctcagcagtcaaatgg 123
           |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 264 ctggacaacactccatcagacccctctgatgttcaccccccatcctcagcagtcaaatgg 323

                                                                       
Query: 124 agtaatagtagtgtcttaaatacgataatcctgttaagatttttgtttctaatttccagg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agtaatagtagtgtcttaaatacgataatcctgttaagatttttgtttctaatttccagg 383

                                                                       
Query: 184 ggcaaacagtccaaaagacaatttctacattgaagtttttgtgtccccttattcatcttc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggcaaacagtccaaaagacaatttctacattgaagtttttgtgtccccttattcatcttc 443

                                                                       
Query: 244 aacccaagcaatccagcacatatactcaaagaacattccaaaacaaggaatttgcataaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aacccaagcaatccagcacatatactcaaagaacattccaaaacaaggaatttgcataaa 503

                                                                       
Query: 304 atcatctgtggtattcaaatattttcagatatttagttgggtttctttccattttcattc 363
           ||||| |   ||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 504 atcatat---gtattcaaatattttcaaatatttagttgtgtttctttccattttcattc 560

                                                                       
Query: 364 tcaagttcttgtgaattttatgttatcaaagagtcttctcagtcttagctagaagcgcca 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcaagttcttgtgaattttatgttatcaaagagtcttctcagtcttagctagaagcgcca 620

                                                                       
Query: 424 tggaatattccgtgactgaatgcttgctcaagctcacacagaggtatcaaaacttgaaag 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggaatattccgtgactgaatgcttgctcaagctcacacagaggtatcaaaacttgaaag 680

                                                                       
Query: 484 atacataagtgggcttcactcactctctgcttggaaggtagactgaggaaggcagcacag 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atacataagtgggcttcactcactctctgcttggaaggtagactgaggaaggcagcacag 740

                                                                       
Query: 544 agttggccataactcagcagttggtgacagtgggcacagttcatctaagtaactaacttg 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agttggccataactcagcagttggtgacagtgggcacagttcatctaagtaactaacttg 800

                                                                    
Query: 604 ggttctcagacagcacagcaggataaggaacaaatccctcttctaagtcagcttcct 660
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ggttctcagacagcacagcaggataaggaacaaatccctcttctaagtcagcttcct 857


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1057
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1047
Effective search space:   680550
Effective search space used:   680550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)