BAC Information

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BAC

Clone NameMSMg01-271O14
Chromosome18 (Build37)
Map Location 29,762,869 - 29,763,202
singlet/doubletsinglet
Overlap genenone
Upstream geneBC051408, LOC100040930, 4930578E11Rik
Downstream geneLOC666073, Pik3c3, LOC666094, LOC666100, EG666111, EG666114
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-271O14.T7 (MSMg01no271_o14.b1)MSMg01-271O14.TJ (MSMg01no271_o14.g1)
ACCAG411334AG411335
length751747
length of high quality
(start - end)
318 (43 - 360)333 (375 - 707)
definitionCHROMAT_FILE: MSMg01no271_o14.b1 PHD_FILE: MSMg01no271_o14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:54 2005CHROMAT_FILE: MSMg01no271_o14.g1 PHD_FILE: MSMg01no271_o14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTTCCAGTCCTTTACTCTGAGGTAGTATCTGTCTTTGTCACTGAGGT
GGGTTTCCTGTATGCAGAAAAATGGTGGGTCCTCTTTACATATCCAGTCT
GTTAGTCTATGTCTTGGTGTAGGGGAATGCTAGGGCCAGGAAATGGGAAT
GAGTAGGTTGGTGAGCAGGGGAGGGACTGGATATAGGGAGTTTTCAGAGG
GGAAACCAGGGAAGGGGATAACATTTGAAATGGAAAAGAAGAAAAAGTCT
AATAAAAAAATTTTTAATAAGAATGTGATTTCACCCCAAGAAATAAGTCC
AGTCTCAGTTTTTTTATTACCCCCTCCCCCCCAGCAACTCAAATGCCACA
GAGTTTCATGCTTCGCCCCACCATAAAATAGAAGATCTATGTTTCTCATG
TTTATGTATTCCACTCCCTGTTACGTAAAGATTTTTATCCAAAAGCTTCC
TGTTAAAAGCAAGTGAGTCACAAACTTTTTAACTCTGAATATTGAAAGAA
TTTATCCTCTATCCTACATTGAGTTTGATGTTTGTATTGATCAAGGGTTT
CCACTACTTGTATAGAAGGCTCAGGGAAGAGCTTGTATGATCCCCACACC
ATCTCAGATCATCTGCACTAAGGCTGATTTTGAGAGGTGTCCAGGTTTGT
TTGGTAAGATCAAACTGTCTTCTAAACATCTTTCAACTACTTGTATTATT
G
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTTGGCTTCAATCAATGATGGACTCTAACC
TGTAGAATAAAATCACCTCCTTAAGCTGATTTTATTCATAGTGTTTACCA
CAACAAAAGAAGACACTAGAACAATGAAGTTCTCTGTATTTAAAGAGAAT
ACAGGTCTTGGTCTCTCCAGACGCCCGGGCTTTATAGTATGCTAAAGTAG
AGGAAATATAGGAATTTCTCCAAATCAGAGCGAGATAAGTCAGGTTCTGT
GGTAAATCAGCCTATTTTTTTAATATTTACAGATGCTTCTCAACTAGCGA
GAATTTTTATTTCACACCCCCCACCCTTGTACCATTCTGTTAACATATTG
CCTAACAAACGTTCATGTTATATTTTTGTGTGTTTTGATTGAAAGAAAGG
TTAATGAATCAGAAATGTTTATTATTAACTCTGAGCAGACTGGCTCTCTC
AACCATACTTGGGCCCTCTGCAGAACTGTTGGCAGATCATCTGTCACAGC
CTTAGTTACCCTTTCATTGCCACGTGCCTTCTACACAGCAGCCTGGGTTA
TTGAATCACTTTAAAGTGAAGAAAACAAAGGTATGTGCCAATAACTCCTT
CCTACAGTATACTGTGTATTAATCAATACAATGATGATGGCTGTGTATTT
TGAATCAGTGTCTGCCAAAACTTGTTTTCTTCTTTAGGATATAAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no271_o14.g1 MSMg01no271_o14.g1 CHROMAT_FILE:
MSMg01no271_o14.g1 PHD_FILE: MSMg01no271_o14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:54 2005
         (333 letters)



>mm_chr18_29762669_29763402
          Length = 734

 Score =  623 bits (322), Expect = 0.0
 Identities = 331/334 (99%), Gaps = 1/334 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccttgtaccattctgttaacatattgcctaacaaacgttcatgttatatttttgtgtgtt 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 ccttgtaccattctgttaacatattgcctaacaaatgttcatgttatatttttgtgtgtt 260

                                                                       
Query: 61  ttgattgaaagaaaggttaatgaatcagaaatgtttattattaactctgagcagactggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgattgaaagaaaggttaatgaatcagaaatgtttattattaactctgagcagactggc 320

                                                                       
Query: 121 tctctcaaccatacttgggccctctgcagaactgttggcagatcatctgtcacagcctta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctctcaaccatacttgggccctctgcagaactgttggcagatcatctgtcacagcctta 380

                                                                       
Query: 181 gttaccctttcattgccacg-tgccttctacacagcagcctgggttattgaatcacttta 239
           | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctaccctttcattgccacgctgccttctacacagcagcctgggttattgaatcacttta 440

                                                                       
Query: 240 aagtgaagaaaacaaaggtatgtgccaataactccttcctacagtatactgtgtattaat 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagtgaagaaaacaaaggtatgtgccaataactccttcctacagtatactgtgtattaat 500

                                             
Query: 300 caatacaatgatgatggctgtgtattttgaatca 333
           ||||||||||||||||||||||||||||||||||
Sbjct: 501 caatacaatgatgatggctgtgtattttgaatca 534


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 734
Length adjustment: 9
Effective length of query: 324
Effective length of database: 725
Effective search space:   234900
Effective search space used:   234900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)