Query= MSMg01no271_p03.b1 MSMg01no271_p03.b1 CHROMAT_FILE:
MSMg01no271_p03.b1 PHD_FILE: MSMg01no271_p03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:57 2005
(397 letters)
>mm_chr18_37416903_37417699
Length = 797
Score = 656 bits (339), Expect = 0.0
Identities = 370/393 (94%), Gaps = 20/393 (5%)
Strand = Plus / Plus
Query: 5 gaattcagacaagtatgttccatttggaatactgatagagatcaggactttaccaaggga 64
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagacaagtatgttccttttggaatactgatagagatcaggactttaccaaggga 264
Query: 65 ccattgggggcgcttttaagactttaccaaggggtgctttcaagggaagggagagcatgg 124
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccattgggggcgctttcaagactttaccaaggggtgctttcaagggaagggagagcatgg 324
Query: 125 tataaaggattaaaaaggaatattggaacaggaaatgttaaactggggtgagagatgaga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tataaaggattaaaaaggaatattggaacaggaaatgttaaactggggtgagagatgaga 384
Query: 185 gagcaaagtaggagagagaatttgaggagaataactaacactaaaagccttttgaaatgc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gagcaaagtaggagagagaatttgaggagaataactaacactaaaagccttttgaaatgc 444
Query: 245 ctacgagtactactaacaccatcactactactattactataaaaatctatctatctatct 304
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctacgagtactactaacatcatcactactactattactataaaaatctatctatctatct 504
Query: 305 atctatctatctatctatctatctatctatctatctatctatctatctatctaacatata 364
||||||||||||||||||||||||||||||||| |||||||
Sbjct: 505 atctatctatctatctatctatctatctatcta--------------------acatata 544
Query: 365 tgtggtgtgtgtgtgtgtgtgtgtgtgtgtgtg 397
|||||||||||||||||||||||||||||||||
Sbjct: 545 tgtggtgtgtgtgtgtgtgtgtgtgtgtgtgtg 577
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 69
Number of extensions: 27
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 797
Length adjustment: 9
Effective length of query: 388
Effective length of database: 788
Effective search space: 305744
Effective search space used: 305744
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no271_p03.g1 MSMg01no271_p03.g1 CHROMAT_FILE:
MSMg01no271_p03.g1 PHD_FILE: MSMg01no271_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:57 2005
(438 letters)
>mm_chr18_37576274_37577111
Length = 838
Score = 781 bits (404), Expect = 0.0
Identities = 431/442 (97%), Gaps = 4/442 (0%)
Strand = Plus / Minus
Query: 1 tattaaacacatgcataatctttaacttcttattttaaaatgaatatattttgtgacttt 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 826 tattaaacacatgcataatctttaacttcatattttaaaatgaatatattttgtgacttt 767
Query: 61 agatctagaagtaagagaggaaatatttctccccaatgctgggaagattgaacctagaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 agatctagaagtaagagaggaaatatttctccccaatgctgggaagattgaacctagaga 707
Query: 121 cttttacctatgaggcttttctgttggcctctaacagc----ttgtttgtttgtttgttt 176
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 706 cttttacctatgaggcttttctgttggcctctaacagcttgtttgtttgtttgtttgttt 647
Query: 177 gcttgtttttacttcaggtgggtattttgaatgctagacaccacacctgactagttattt 236
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 gtttgtttttacttcgggtgggtattttgaatgctagacaccacacctgactagttattt 587
Query: 237 gtcacaaagtgggcaagccattagagttgcttctcatatttaagtcttatcgattgtttt 296
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 586 gtcacaaagtgggcaagccattagagttgtttctcatatttaagtcttatcgatagtttt 527
Query: 297 gttagttcttagtttttctcacttttacatcacttaaaatttgaagccaaataaccaaaa 356
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 526 gttagtccttagtttttctcacttttacatcacttaaaatttgaagtcaaataaccaaaa 467
Query: 357 ctcacatatccaggataagaaatggtcatctatttcccttttatatttcattatatcctt 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ctcacatatccaggataagaaatggtcatctatttcccttttatatttcattatatcctt 407
Query: 417 agggggaaacattatttcaggc 438
||||||||||||||||||||||
Sbjct: 406 agggggaaacattatttcaggc 385
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space: 355641
Effective search space used: 355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
