BAC Information

Click to search

BAC

Clone NameMSMg01-272E02
Chromosome18 (Build37)
Map Location 35,335,754 - 35,336,030
singlet/doubletsinglet
Overlap geneCtnna1
Upstream geneLOC666313, Apc, Srp19, Reep5, Pkd2l2, 2610024E20Rik, Wnt8a, Nme5, 4933408B17Rik, Brd8, Kif20a, Cdc23, Gfra3, Cdc25c, LOC100041859, 2810012G03Rik, LOC100041879, LOC100041887, Jmjd1b, Reep2, Egr1, Etf1, Hspa9, LOC100041377, EG626954, LOC100041951
Downstream geneLrrtm2, Sil1, LOC100041423, LOC666460, LOC666462, EG383341, EG436583, Matr3, Paip2, Slc23a1, 2010001M09Rik, Gm1614, 5133400G04Rik, Dnajc18, 1110006O17Rik, 1700066B19Rik, 2610307O08Rik, LOC666505, Ube2d2, Cxxc5, LOC100042131, Psd2, LOC100042150
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272E02.T7 (MSMg01no272_e02.b1)MSMg01-272E02.TJ (MSMg01no272_e02.g1)
ACCAG411590AG411591
length775720
length of high quality
(start - end)
315 (100 - 414)276 (77 - 352)
definitionCHROMAT_FILE: MSMg01no272_e02.b1 PHD_FILE: MSMg01no272_e02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:22 2005CHROMAT_FILE: MSMg01no272_e02.g1 PHD_FILE: MSMg01no272_e02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCCTTTTCCTTTTCCCTTTTTCAACCTATCTTCTCTTCCCNATATCNNN
CCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTGAGTTTCCAAAGTTTTCCTGGCACTACCTACCAAACACT
GAAAAGTAGTTACCATCAACTCTACACAGTCTCTTGTAGAAAACAGAAGC
AGAAGTGATGTTTCCTCTCCTATAAAATAGGAGGCTGGTATTATACTTCT
ACCTAAACGAGATAAATATCTAAAAAAAAAAACAAAACAAAACAAAACTT
GAGAATAACATTCCTCGTGAATATAGATGCAGAAATCTCCAATTCGATAG
AGACAAGTCAAGGTCAGGGATCTATGTATAGTTCCAGAAAGGGCTGCGTA
GAAAGACACGATCTTTTTTTACCCCCCCCCCCCCGCAACAAAAACTGGTC
AGACTGGGTATGATAGTGTATACCCATAAACCAGCACAAAGGGCTGTGAA
CTTGAGGCCAGCTGAGCTATGTAACAAGACTCTATCCCCACAAAATCAGA
AACAAGCAGACAAAAACATAAATCCCAATAGGTGTAACCACCAGTCAGCA
GCTAAAGAAGACACATTACCTCATCATATATCAATTCAGATATCAATAAT
GTGACAGACATTTCATACCAGTTTATGATGTAAACTCAAAAAAATCCAGG
ACTAGAACCTTCCTTGACTTGATAAAGACATTGATGGGGAAAAAAAAACT
ATATCGAATACACTTTATAGCTAGC
CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTACATATCAGCAGTCCTCAACC
TGTGAATGGCGATCCCAAAATATTTATATTAGGATTCCTAGTAGTAGCAA
AATTAGAGTTATGAAGTAGCAACAGAAATAATTTTATAGTTGGGGGGGTC
ACCACAATATGAGGAACTGTATTAAAGGGTCACTGCATTAGGAAGGTTGT
TAGACATGATCCTCAGTGTATTAAAGAGAAGTATCAATAAATGTTGAATG
TTTTTTAAATAAGGTACCAAAAATTTTTGTTTTCTCTGTGCCCTTTTTCT
ACCCAGGCTTTCAAGTCCCTCTGGGTCAGGACTCCCTGTTTGGATTGTAN
CCGTGAGCTCCTTTCCCTTAAAAAACCATTGAAGATTGGCCGGTGGGGGG
GTGACCAGAAAATCTGACAAGAGAATGAAGCTGTGTGCTGTCTATAGGCC
TTCCTTCCTGCTGTTCATCTTACGTGGCGAGAAGTCACACTGTATACCTT
GCTTCTCTCCTCAGAACAGGCGTTCAGTGCCTCTGTTTATCTTTCCCTTT
CCATCTATCTGCCTTTGCAACACTCATCCTTTTAACTACTCAGCAGATTG
CCCCTTCTTTTATGTTGAGATTTTGACACATGCCTTCCATTGTCTTGGGT
TGGCTCATGTTTTCACGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_e02.g1 MSMg01no272_e02.g1 CHROMAT_FILE:
MSMg01no272_e02.g1 PHD_FILE: MSMg01no272_e02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:22 2005
         (276 letters)



>mm_chr18_35335555_35336230
          Length = 676

 Score =  513 bits (265), Expect = e-150
 Identities = 274/277 (98%), Gaps = 1/277 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttacatatcagcagtcctcaacctgtgaatggcgatcccaaaatatttatattaggatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 cttacatatcagcagtcctcaacctgtgaatggcgatcccaaaatatttatattaggatt 259

                                                                       
Query: 61  cctagtagtagcaaaattagagttatgaagtagcaacagaaataattttatagttggggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cctagtagtagcaaaattagagttatgaagtagcaacagaaataattttatagttggggg 319

                                                                       
Query: 121 gg-tcaccacaatatgaggaactgtattaaagggtcactgcattaggaaggttgttagac 179
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gggtcaccacaatatgaggaactgtattaaagggtcactgcattaggaaggttgttagac 379

                                                                       
Query: 180 atgatcctcagtgtattaaagagaagtatcaataaatgttgaatgttttttaaataaggt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 atgatcctcagtgtattaaagagaagtatcaataaatgttgaatgttttttaaataaggt 439

                                                
Query: 240 accaaaaatttttgttttctctgtgccctttttctac 276
           |||||||| | ||||||||||||||||||||||||||
Sbjct: 440 accaaaaagtcttgttttctctgtgccctttttctac 476


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 676
Length adjustment: 9
Effective length of query: 267
Effective length of database: 667
Effective search space:   178089
Effective search space used:   178089
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)