BAC Information

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BAC

Clone NameMSMg01-273I09
Chromosome18 (Build37)
Map Location 71,140,902 - 71,141,186
singlet/doubletsinglet
Overlap genenone
Upstream geneRab27b, 2310002L13Rik, 4930503L19Rik, Stard6, Poli, Mbd2, EG668032
Downstream geneDcc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273I09.T7 (MSMg01no273_i09.b1)MSMg01-273I09.TJ (MSMg01no273_i09.g1)
ACCAG412501AG412502
length768725
length of high quality
(start - end)
77 (45 - 121)287 (74 - 360)
definitionCHROMAT_FILE: MSMg01no273_i09.b1 PHD_FILE: MSMg01no273_i09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:55 2005CHROMAT_FILE: MSMg01no273_i09.g1 PHD_FILE: MSMg01no273_i09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATGGAATGAATATATATATATATATATATATATATATATATATATA
TATATATATATATATATGGAGCTTTATATATATATAGATATGGATATATA
GAGCGCTATATCGACATCTAGACGGATAGTTGGATCGCCGTTGGGGCGTG
TGCTTGCGGGCGGGCGCGCTCTTCGGCGTTAGCGTGCGGTGCTAACGACA
GTCCCTCCCCATCACCCGGCTCTCAGCGCGTAGCTCAGGTCTCCATATCT
CCCCCCGCACGCGTGAAAGCCCGTTGTTTGCCGGCGGGCCCTCGGGGGGG
GCGGGCGGGGCTTTTGGTCGTTTCCCCGAACAGGCCCCCAGGTAGTTTTG
TTGGTAGGTCTGCGGGGGGGGCCCCCCCATAAAAAAAAAAATTCTGGCGG
GGGGGGGGGGGGGTGTGTCCTACTATGCGTCTGCGCTAAGGCCGCGTCGC
GTTCCCTCGGCGCGGAGCTTGCCACTAGCCATTGCCGCCCCCCTTTTTCT
ACGCCGTCCATCCGCCTTCTCCTTGGTTCGTCCTTGTTGGCCTTGCCGCG
TGCGGTGTTCTACCCTATGGATCCTGTGCCTCCTATTGGTTGCCCCGCTG
TTTCGCCCCCCTCCGGCTCCCTTTTTTTCGCTCCCTCCCTGCCCTCTTTT
GGTGATGCGCGGGAGGGGCTCGTATCTATTCTACTCCTTGGCTCGCTTCT
CGGCTTGCGTTTGTGGTT
TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTTCACACTTTCTAAAGTCCATTGAC
AAATTTTTGGAGCATTGATGTTTTTGTTAGGCCTGTATTTCCTTTAGCGA
AAGAGAAATGCTATGAAACTGTGTTAACCTGCCATTCTCATCTTTGATAT
TCATAACGTTCCAACAGTAGTAGAATCTGCTATTGTGAGTTTAAGATTGA
CCCACTGGGTGTGCTGCCAAATTACTCCTTAGGGCCAGAGAACACGCAGG
CAGCCTCAGGTAGGGTTGCAAGCAGTCAATGAGTTAATTTCCCCAGTGAT
AGAATTAATGGATGCGATACCCCCCCCCCACCAAGTCATTTGAGCATTGG
AAAGAAAAACAATGTTAGCTTCATAATGAACATCCCTTTGAAATTCTTCT
CAGAAAGGTCAATACAAGGCAGACATAACTGGAAACATATCCCAGCATAT
TTATGTCTTTGTGTGTATATGTAGAGAAGGAGAGAAGGAGGGCGAGGGAG
TGGGAGGCTGTAGGGGAAAGAGAGAGGGAGAGAAAGTAACTTCTTCTCAT
CTATAATTACTCACACACTCACACACAGAAACACACTCACACTCTTATTC
CCTCCCCTTACCTCCATGATACTCTGTACTTTCGCTTGCTCATATAATCA
ATATGATTATATGATATCTCCAGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_i09.g1 MSMg01no273_i09.g1 CHROMAT_FILE:
MSMg01no273_i09.g1 PHD_FILE: MSMg01no273_i09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:55 2005
         (287 letters)



>mm_chr18_71140702_71141388
          Length = 687

 Score =  551 bits (285), Expect = e-161
 Identities = 285/285 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttcacactttctaaagtccattgacaaatttttggagcattgatgtttttgttaggcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttcacactttctaaagtccattgacaaatttttggagcattgatgtttttgttaggcc 260

                                                                       
Query: 61  tgtatttcctttagcgaaagagaaatgctatgaaactgtgttaacctgccattctcatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtatttcctttagcgaaagagaaatgctatgaaactgtgttaacctgccattctcatct 320

                                                                       
Query: 121 ttgatattcataacgttccaacagtagtagaatctgctattgtgagtttaagattgaccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgatattcataacgttccaacagtagtagaatctgctattgtgagtttaagattgaccc 380

                                                                       
Query: 181 actgggtgtgctgccaaattactccttagggccagagaacacgcaggcagcctcaggtag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actgggtgtgctgccaaattactccttagggccagagaacacgcaggcagcctcaggtag 440

                                                        
Query: 241 ggttgcaagcagtcaatgagttaatttccccagtgatagaattaa 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggttgcaagcagtcaatgagttaatttccccagtgatagaattaa 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)