Query= MSMg01no273_p08.b1 MSMg01no273_p08.b1 CHROMAT_FILE:
MSMg01no273_p08.b1 PHD_FILE: MSMg01no273_p08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:25 2005
(319 letters)
>mm_chr18_29305408_29306126
Length = 719
Score = 551 bits (285), Expect = e-161
Identities = 300/305 (98%)
Strand = Plus / Minus
Query: 15 agttaactttattattaccttttgaaacaaggtcttaaatcccaggctgttcttaaactt 74
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 agttaattttattattaccttttgaaacaaggtcttaaatcccaggctgttcttaaactt 660
Query: 75 tctatccaactggggatgacactgaacttgtgattcgataattgtaagcatgtactgcta 134
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 659 tctatacaactggggatgacactgaacttgtgattcgataattgtaagcatgtacagcta 600
Query: 135 tgcttgctttatgcagaatcgtggagctaatcaggtccttgtgtattcgagacaagcact 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 tgcttgctttatgcagaatcgtggagctaatcaggtccttgtgtattcgagacaagcact 540
Query: 195 gactaagttacatcctgagctacacaggatgcctattaagaaagcatgcaaactaaggtg 254
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 gactaagttacatcccgagctacacaggatgcctattaagaaagcatgcaaactaaggtg 480
Query: 255 attaattgaccatggcataacaatctaagacaatacctcctacagaggagcaatgtctac 314
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 479 attaattgaccatggcataacaatcaaagacaatacctcctacagaggagcaatgtctac 420
Query: 315 ataga 319
|||||
Sbjct: 419 ataga 415
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space: 220100
Effective search space used: 220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no273_p08.g1 MSMg01no273_p08.g1 CHROMAT_FILE:
MSMg01no273_p08.g1 PHD_FILE: MSMg01no273_p08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:26 2005
(537 letters)
>mm_chr18_29162965_29163900
Length = 936
Score = 928 bits (480), Expect = 0.0
Identities = 525/548 (95%), Gaps = 16/548 (2%)
Strand = Plus / Plus
Query: 1 caagcagctgaggctatggagtgaaatgtgaaatttttcttcaaagaaaccaaggaaagg 60
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 191 caagcagctgaggctatggagtgaaatgtgaaatttttcttcaaagaaa-gaaggaaagg 249
Query: 61 ccaagacaaaaaaaaaaaaaaaaa----------aaaaaa-gaaaaaagaaaaaagacaa 109
|||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 250 ccaagacaaaaaaaaaaaaaaaaaaaaaaggaggaaaaaaggaaaaaagaaaaaagacaa 309
Query: 110 gaagatgaaatagaatttggatggagaaacattgttcattgagtgaacacaggtagccag 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gaagatgaaatagaatttggatggagaaacattgttcattgagtgaacacaggtagccag 369
Query: 170 gtgatccaagtgatgcctgagaactctggaaggacctgccagggtagacaaagaacttgt 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gtgatccaagtgatgcctgagaactctggaaggacctgccagggtagacaaagaacttgt 429
Query: 230 cacatctagtctcaaaatttacatgaaatgtaaaactgaggactcatatggcatgcatta 289
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tacatctagtctcaaaatttacatgaaatgtaaaactgaggactcatatggcatgcatta 489
Query: 290 gcacatatgagttgagacaggagatcaaaggggaaataagaaactctttcattctctatt 349
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 490 gcacgtatgagttgagacaggagataaaaggggaaataagaaactctttcattctctatt 549
Query: 350 agctctatacaatgtgaccatcacctacatttgatgttcacacgaaatgtttcaaatacc 409
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 550 agctttatacaatgtgaccatcacctacatttgatgttcacacaaaatgtttcaaatacc 609
Query: 410 taacaccatgcatagtctgttacatgtgattctaaacatgtactcaactgagtctgcttt 469
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 610 taacaccatgcatagtctgttacatgtgattctaaacatgtactcaactaagtctgcttt 669
Query: 470 ccatggtcagggagacattatgggatgctgaccttgtctctaacttgccccccccccaaa 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 ccatggtcagggagacattatgggatgctgaccttgtctctaacttgccccccccc---- 725
Query: 530 aaaatagc 537
||||||||
Sbjct: 726 aaaatagc 733
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 936
Length adjustment: 10
Effective length of query: 527
Effective length of database: 926
Effective search space: 488002
Effective search space used: 488002
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
