BAC Information

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BAC

Clone NameMSMg01-274E11
Chromosome18 (Build37)
Map Location 40,164,847 - 40,165,219
singlet/doubletsinglet
Overlap genenone
Upstream geneArhgap26, Nr3c1, Pabpc2, LOC100041939
Downstream geneYipf5, Kctd16, EG225416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274E11.T7 (MSMg01no274_e11.b1)MSMg01-274E11.TJ (MSMg01no274_e11.g1)
ACCAG413058AG413059
length744744
length of high quality
(start - end)
368 (377 - 744)284 (71 - 354)
definitionCHROMAT_FILE: MSMg01no274_e11.b1 PHD_FILE: MSMg01no274_e11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:47 2005CHROMAT_FILE: MSMg01no274_e11.g1 PHD_FILE: MSMg01no274_e11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AATAATTTCCGTTAATATGAACTTTATTGTAATGCTCTATGACAATGTGA
TAAATACATGTTTCGCCCAGATGCCGAATATTTTTTTAAATGTGTGATGT
GTGCCCCTGCCTCAACAAGTTGACAACTGTGTCCATCACTATAGAGATGC
CCTAGAAGCACTTTTATGGGAAGAATGAAGTACAGCAATGAACCAATCAG
AGGATACCTTGCTTTCTCAGCGTGATCATTCTAGTAAGGAGTGAAAAAAC
CAATAAGGCGAATATTCAATAAATAAATAAATAAATAAATAAATAAATAA
ATAAATATTTAAATAACTAACTAACTAGGATTTATGTATTTATTTATTTC
AACAAGTTTATTTATAAAATTTTCTGCTTTCTCAGAAACAAAGTAGAAAA
GGGGAATCCAGAGTGCCAGGGGCAGCAGATGAAGTCTGAAATGACAATTT
TGCTTGATTTAGACTTTACTGAGAAGGAGCCCTTTGAACACAGGTAATGG
TGGAGATGCAGACACCAGGAAAAGCATTTCAGGGTATGAGCAGTCAGAGC
AGTGTGAGGGGAAATACAGCAAACAAAGCCTGAGAGGTGCGGTCTGGAGA
ATAATGAACTAATAGAGGGACAAACGATTGTCCTTTACTATCCTAGGGAA
ATAAAGTTAATTGTGGGTGTCAAAGGAAGGACTATGGGTCTGGN
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACTGCAACAGCAAACTAGGAAAGGAGATAA
CATTCGAAATGTAAATCAAGAACATATTTAATAAAAATATTTTTTAAAAA
AGACAGACAACTTATTTATTATTTCTCCAGTTCTCTTGGGATTTTCCCAA
CTGGGGGTCATTATAAATAAGAGTACTTTAGAGCTTTGCCTACAGATTTC
CTGTGAGCATAAATATTCACTTAAATTTGGGTAAAGAATGTAATTGTTTG
GGTCATATAAATCTACATATAAGAATTTACCAAATTCTTTTTCAAAGCAT
CTGTTTCATTTTGAACCCCCCCCCGTAGTGTAGGAAAGTATTAGTTGCTG
CACATCTTTCTCAGGGGAAAAGAGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGCATGAATATGCTTCTCTGTGTCTATAATCACCTTTATTGTGAAT
TAGCTTGTCGGTTGGCCTTCCAGGTTCTTCTGTGGCTTTACTGCGGTTGG
GAGTACGCATTACAGATGAAATTGCTCTAAGACCATAGGTCGAGGGCAAG
AAACACAGTGAAAAAGAAAATCTTAAGGGAAAAGGAGAGCGAACCATATT
TCTCTTTTCAAATCTGTAAAAATGGTTCGCAAGAGCTGGCGTTCTCTTGA
TCAGTCAATAGCACTGATTACCCTTCGGGTATTAAAAGCCGGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_e11.b1 MSMg01no274_e11.b1 CHROMAT_FILE:
MSMg01no274_e11.b1 PHD_FILE: MSMg01no274_e11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:47 2005
         (368 letters)



>mm_chr18_40164647_40165420
          Length = 774

 Score =  588 bits (304), Expect = e-172
 Identities = 354/374 (94%), Gaps = 8/374 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggatttatgtatttatttatttcaacaagtttatttataaaattttctgctttctcaga 60
           ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 573 aggatttatgtatttatttatttcaacaaatttatttataaaattttctgctttgtcaga 514

                                                                       
Query: 61  aacaaagta-gaaaaggggaatccagagtgccaggggcagcagatgaagtctgaaatgac 119
           ||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 513 aacaaagtaggaaaa-gggaatccagagtgccaggggcatcagatgaagtctgaaatgac 455

                                                                       
Query: 120 aattttgcttgatttagactttactgagaaggagccctttgaacacaggtaatggtggag 179
           || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 454 aactttgcttgatttagactttactgagaaggagccatttgaacacaggtaatggtggag 395

                                                                       
Query: 180 atgcagacaccaggaaaagcatttcagggtatgagcagtcagagcagtgtgaggggaaat 239
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 394 atgcagacaccaggaaaagcatttcagggtacaagcagtcagagcagtgtgaggggaaat 335

                                                                       
Query: 240 acagcaaacaaagcctga------gaggtgcggtctggagaataatgaactaatagaggg 293
           ||||||||||||||||||      ||||||||||||||||||||||||||||||||||||
Sbjct: 334 acagcaaacaaagcctgagcaggggaggtgcggtctggagaataatgaactaatagaggg 275

                                                                       
Query: 294 acaaacgattgtcctttactatcctagggaaataaagttaattgtgggtgtcaaaggaag 353
           ||||| |||||||||||||| ||||||||||| ||||||||| ||||||| |||||||||
Sbjct: 274 acaaatgattgtcctttactgtcctagggaaagaaagttaatcgtgggtgacaaaggaag 215

                         
Query: 354 gactatgggtctgg 367
           ||||||||||||||
Sbjct: 214 gactatgggtctgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 774
Length adjustment: 9
Effective length of query: 359
Effective length of database: 765
Effective search space:   274635
Effective search space used:   274635
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)