BAC Information

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BAC

Clone NameMSMg01-276C22
Chromosome18 (Build37)
Map Location 35,488,096 - 35,651,742
singlet/doubletdoublet
Overlap geneSil1, LOC100041423
Upstream geneSrp19, Reep5, Pkd2l2, 2610024E20Rik, Wnt8a, Nme5, 4933408B17Rik, Brd8, Kif20a, Cdc23, Gfra3, Cdc25c, LOC100041859, 2810012G03Rik, LOC100041879, LOC100041887, Jmjd1b, Reep2, Egr1, Etf1, Hspa9, LOC100041377, EG626954, LOC100041951, Ctnna1, Lrrtm2
Downstream geneLOC666460, LOC666462, EG383341, EG436583, Matr3, Paip2, Slc23a1, 2010001M09Rik, Gm1614, 5133400G04Rik, Dnajc18, 1110006O17Rik, 1700066B19Rik, 2610307O08Rik, LOC666505, Ube2d2, Cxxc5, LOC100042131, Psd2, LOC100042150, LOC100041531, Pura, 0610010O12Rik, Pfdn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276C22.T7 (MSMg01no276_c22.b1)MSMg01-276C22.TJ (MSMg01no276_c22.g1)
ACCAG414436AG414437
length746744
length of high quality
(start - end)
667 (71 - 737)247 (72 - 318)
definitionCHROMAT_FILE: MSMg01no276_c22.b1 PHD_FILE: MSMg01no276_c22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:04 2005CHROMAT_FILE: MSMg01no276_c22.g1 PHD_FILE: MSMg01no276_c22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,488,096 - 35,488,762)(35,651,498 - 35,651,742)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGCCAGTCTCGGCTACATAGTAAGACACTGACTGTCTCAATAAG
ATTTCATACTGCAGCCCATCAAGCGGCTCCCAAGTGCCCCACACCTCCAC
ACAGACACAGACCCACACAGACAGATCCCCATCACACACAGACACACAGA
CAGATCCCCACCACACAATGAAGTACTATATTCTCTGTTAGCTTTGGCAA
TAAGATCTAAAATGAACACAACACACACAAAGCCAAAGGAGATGCTGACA
GTGCTCTCTCATGAGGTGCAGTTTCCTCTGAACGCTGATTAGTAAGGTAA
GCCAGGCCTGCTGTCACAGCGCTGCAATCTCAGGGAGGCTAAGGAAGGTC
AATCTTAAATTCAAGGGGAGCCTGGACTACAGAGTGAATGAAAAGATTAA
CCTAGGAGTTGATGGCTACCTGGGCTAAGTAGTGTGTTTCATACCAGCCT
GAATGGAGTGAGGCTCTAGATTAAGTAAGTAACATTAACAAAGCTTTAAG
AGGGCTAGACTGAGACTAGCAAGATGGTTCAGTGGATAAAGGCCCTTGTC
ACCAAGTCCGATGACTCGAGTTCAGTCCTCAGAGCCCAAGGAACCTACAG
GATAGAGAGAAAACCAACTTCCAGTCTAAGTCAGCTGTCTGCTGACTTGT
GTACATACATACTCACTCTAAATCAGAGGTTCTTACCCTTCCTAAT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTACAAAAAATTCCTACTGCATCAGGGACCAGTTCCTAAG
CAAGGTATTTAAAGGTAACCCCCGTCTTACAGTCAGTAGGAAGTTGACTT
TGATTGTGTTTGTGATGTAAAGTCTCCATCCTGAGACCTTTTTGCTCATG
GTGCTTTGTCCTGGAGGACATCACTGAAGAAGATGTTTCTCAGTTCTCCC
CTCCCTTGTAAACATGGTTCCTATACAGAGTGTAGCTATTGATCATAGTT
ATTTTATTTAGATGAGTCTCTTGTATCCCAGGATGACCTATAACTCATTT
AATAGTTGATTTTTTTCTTCACCCCCCCCCAACTGTTTTTTTGATTCTCT
TACCTCTACCTTTAAAGTGTGTCACAAAAAAATGATGTAGTGCTGGGACC
AAACCCAGGACTTTGAATATCTAAGCAAATGCTCTACCAGCTGAGCTACA
TCTGTAGCCCCTGTTTGTTTTCATTTGTTTGGTTTTGGGGGTCTACAGCC
AGGAGATACCTCTCTAGTTTTTTAATGCATCAGTTTTGCGATTGATAAGT
TCTTTTATTGATGATAAAAGTGAGCTCTAAGCAAATTAAGTGGGCCACAT
AACTTCTTTAATACTACTTACATTACTGGGATTCTGGTGATAGTGAGAGC
CAGGATATAAGCCTGCGGGGCTAACAGAGGGTGACCAGAGAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_c22.b1 MSMg01no276_c22.b1 CHROMAT_FILE:
MSMg01no276_c22.b1 PHD_FILE: MSMg01no276_c22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:04 2005
         (667 letters)



>mm_chr18_35487896_35488962
          Length = 1067

 Score = 1266 bits (655), Expect = 0.0
 Identities = 664/667 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acatagtaagacactgactgtctcaataagatttcatactgcagcccatcaagcggctcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 acatagtaagacactgactgtctcaataagatttcatactgcagcccatcaagtggctcc 260

                                                                       
Query: 61  caagtgccccacacctccacacagacacagacccacacagacagatccccatcacacaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caagtgccccacacctccacacagacacagacccacacagacagatccccatcacacaca 320

                                                                       
Query: 121 gacacacagacagatccccaccacacaatgaagtactatattctctgttagctttggcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacacacagacagatccccaccacacaatgaagtactatattctctgttagctttggcaa 380

                                                                       
Query: 181 taagatctaaaatgaacacaacacacacaaagccaaaggagatgctgacagtgctctctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taagatctaaaatgaacacaacacacacaaagccaaaggagatgctgacagtgctctctc 440

                                                                       
Query: 241 atgaggtgcagtttcctctgaacgctgattagtaaggtaagccaggcctgctgtcacagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 atgaggtgcagtttcctctgaacgctgattagtaaggtaagccaggcctgctggcacagc 500

                                                                       
Query: 301 gctgcaatctcagggaggctaaggaaggtcaatcttaaattcaaggggagcctggactac 360
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctgcaatctcagggaggctaaagaaggtcaatcttaaattcaaggggagcctggactac 560

                                                                       
Query: 361 agagtgaatgaaaagattaacctaggagttgatggctacctgggctaagtagtgtgtttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agagtgaatgaaaagattaacctaggagttgatggctacctgggctaagtagtgtgtttc 620

                                                                       
Query: 421 ataccagcctgaatggagtgaggctctagattaagtaagtaacattaacaaagctttaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ataccagcctgaatggagtgaggctctagattaagtaagtaacattaacaaagctttaag 680

                                                                       
Query: 481 agggctagactgagactagcaagatggttcagtggataaaggcccttgtcaccaagtccg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agggctagactgagactagcaagatggttcagtggataaaggcccttgtcaccaagtccg 740

                                                                       
Query: 541 atgactcgagttcagtcctcagagcccaaggaacctacaggatagagagaaaaccaactt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atgactcgagttcagtcctcagagcccaaggaacctacaggatagagagaaaaccaactt 800

                                                                       
Query: 601 ccagtctaagtcagctgtctgctgacttgtgtacatacatactcactctaaatcagaggt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ccagtctaagtcagctgtctgctgacttgtgtacatacatactcactctaaatcagaggt 860

                  
Query: 661 tcttacc 667
           |||||||
Sbjct: 861 tcttacc 867


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space:   694449
Effective search space used:   694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no276_c22.g1 MSMg01no276_c22.g1 CHROMAT_FILE:
MSMg01no276_c22.g1 PHD_FILE: MSMg01no276_c22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:04 2005
         (247 letters)



>mm_chr18_35651298_35651944
          Length = 647

 Score =  451 bits (233), Expect = e-131
 Identities = 242/245 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctactgcatcagggaccagttcctaagcaaggtatttaaaggtaacccccgtcttaca 60
           |||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||
Sbjct: 445 tcctactgcatcagggaccagttcctaagcaaggtatttaaaggtaaccttggtcttaca 386

                                                                       
Query: 61  gtcagtaggaagttgactttgattgtgtttgtgatgtaaagtctccatcctgagaccttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtcagtaggaagttgactttgattgtgtttgtgatgtaaagtctccatcctgagaccttt 326

                                                                       
Query: 121 ttgctcatggtgctttgtcctggaggacatcactgaagaagatgtttctcagttctcccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttgctcatggtgctttgtcctggaggacatcactgaagaagatgtttctcagttctcccc 266

                                                                       
Query: 181 tcccttgtaaacatggttcctatacagagtgtagctattgatcatagttattttatttag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcccttgtaaacatggttcctatacagagtgtagctattgatcatagttattttatttag 206

                
Query: 241 atgag 245
           |||||
Sbjct: 205 atgag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)