BAC Information

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BAC

Clone NameMSMg01-277F23
Chromosome18 (Build37)
Map Location 88,708,561 - 88,708,829
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC329008, LOC100039961, LOC100039972, LOC623177
Downstream geneLOC665497, LOC100040003, LOC623208, Socs6, Rttn, Cd226, Dok6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277F23.T7 (MSMg01no277_f23.b1)MSMg01-277F23.TJ (MSMg01no277_f23.g1)
ACCAG415292AG415293
length723716
length of high quality
(start - end)
307 (389 - 695)269 (440 - 708)
definitionCHROMAT_FILE: MSMg01no277_f23.b1 PHD_FILE: MSMg01no277_f23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:30 2005CHROMAT_FILE: MSMg01no277_f23.g1 PHD_FILE: MSMg01no277_f23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCACCTGAGTAACACCGAATGGCAGAGAAGCACCTGAAAAAATG
TTCAACATCCTTAATCATCATTTAAACGCAAATCAAAACAACCCTAAGAT
TCCACCTCACACCAGTCAGAATGTCTAAGATCAAAAATTCAGGTGACAGC
AGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTG
GGATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTGGCGGTTCCTCA
GAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGCGC
ATATATCCAGAAGATGCCCTTTCTGGTAAGAACGACACATGCTCCACTAT
GTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGAT
GCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATG
GAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAA
ATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAA
GGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAAACC
TAGGATACCCAAGATATAAGATACAATTTCCTAAACACATGANACTCAAG
AAAAATGAAGACTGAAGTGTGGA
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTGTTGACTTTCTTCTTCGAAACATCT
CAGGGAACCTCATTTTATTTGCTCAACATATTCCCTAGAATTGTTTTATC
CATACCATCAGGAATTGTTCTTTTCAGTACTTTTCTTTGTCTTCTTTATT
AGAAAGATAGATTTGGTAAGAATTATGCAAGCTTTATTGTTTTTAAACTT
TTATTGACTTAAATTTAGTCTGTACTGGTGGGTTTCAGAAAGATATTTTC
TTTCAAATACACTGTCTACCTTTTATAATTATGCTCAGGGACTTCAATGG
CCACTGACTCTTTCTTTTCTTTCATTCCTTCTATAGTTAGTGGGCTCAAC
CATATGTGGCGCTTAGTAAATTTTCTAAGAACATAAACAGGGTTTTAAAA
GCCACTTGTTATTTATATCGGAAAATTTAAAAATGTGCTGAAACTTGAAA
ATATTCACATTATGAAAGCAGATATTTAGACTTCAAATGTGCTAGAAGAC
ACCAATTTACTAAATGTTTCTCCTTCAAATACCATAGAGTCAGCACTTAA
AAGGCTTCTAGTGACTTTTAGTGATATCTTGAAGCCCCCGCAGAGTTTGA
AAGTTAGCTACTTACAAGCTAAAGTCATACTGTGACAGAACCCTGAGAAT
GAAGCTGAAAGTTACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_f23.g1 MSMg01no277_f23.g1 CHROMAT_FILE:
MSMg01no277_f23.g1 PHD_FILE: MSMg01no277_f23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:30 2005
         (269 letters)



>mm_chr18_88708361_88709029
          Length = 669

 Score =  520 bits (269), Expect = e-152
 Identities = 269/269 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gggttttaaaagccacttgttatttatatcggaaaatttaaaaatgtgctgaaacttgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 gggttttaaaagccacttgttatttatatcggaaaatttaaaaatgtgctgaaacttgaa 410

                                                                       
Query: 61  aatattcacattatgaaagcagatatttagacttcaaatgtgctagaagacaccaattta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 aatattcacattatgaaagcagatatttagacttcaaatgtgctagaagacaccaattta 350

                                                                       
Query: 121 ctaaatgtttctccttcaaataccatagagtcagcacttaaaaggcttctagtgactttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ctaaatgtttctccttcaaataccatagagtcagcacttaaaaggcttctagtgactttt 290

                                                                       
Query: 181 agtgatatcttgaagcccccgcagagtttgaaagttagctacttacaagctaaagtcata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 agtgatatcttgaagcccccgcagagtttgaaagttagctacttacaagctaaagtcata 230

                                        
Query: 241 ctgtgacagaaccctgagaatgaagctga 269
           |||||||||||||||||||||||||||||
Sbjct: 229 ctgtgacagaaccctgagaatgaagctga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 669
Length adjustment: 9
Effective length of query: 260
Effective length of database: 660
Effective search space:   171600
Effective search space used:   171600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)