BAC Information

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BAC

Clone NameMSMg01-278D07
Chromosome18 (Build37)
Map Location 60,510,357 - 60,510,638
singlet/doubletsinglet
Overlap genenone
Upstream gene4833446K15Rik, LOC667549, EG240327, LOC546714, EG225594, F830016B08Rik, LOC667578
Downstream geneEG667584, LOC435565, Iigp1, EG629292, LOC667597, 2010002N04Rik, Dctn4, Rbm22, Myoz3, Synpo, LOC100042675, Ndst1, Rps14, LOC667619, Cd74, Tcof1, LOC100042699, Arsi, Camk2a, Slc6a7, Cdx1, Pdgfrb, Csf1r, A630042L21Rik, Slc26a2, Pde6a, EG667279, Ppargc1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278D07.T7 (MSMg01no278_d07.b1)MSMg01-278D07.TJ (MSMg01no278_d07.g1)
ACCAG415894AG415895
length694700
length of high quality
(start - end)
234 (98 - 331)284 (57 - 340)
definitionCHROMAT_FILE: MSMg01no278_d07.b1 PHD_FILE: MSMg01no278_d07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:28 2005CHROMAT_FILE: MSMg01no278_d07.g1 PHD_FILE: MSMg01no278_d07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTACCTGTTCAAAGAGGATCCGCGGAATTCAACATTACAGAGACATATAA
TGTGCTCAGCGTGATACCTGCCACATAATAAACAAAACTCTAAACGTGCA
GAACAAAGAAAGAATATTAAAAGATGCAAGGAAAAAAGGTCAAGTTACAT
ATAAAGGCAGACCTATCAGAATTATACCCAACTTCTCAACAGAGACTCTA
AAAGCCAGAAGAGCCTGGGCTGATATCTTGCAAACTAGGAGATCACAGAT
GTCAACCCAGACTACTATGCCCAGCAATCATCATAGTTGATGACTTATTC
ATCATAGATGGAGAAAACAAGATATTGCAGCATAATCTTATTTACACAAT
ATCTATCTTAATTTCATTAAGAAATCAGAACTCTCCATATCAGATAATTC
ATACCATGGCAAAAAAATTGACTACATAATAGAGCTTAGCTTTTGATCAA
CCTTAATAATTACTAGAGACATGAATAATATGGTCAGTTTGGGGACAAAA
TATTTATAGATCAAACTCTACAAGAAACGAAATATTTCTAGTGTGGTAAT
GTCTAACTTTTTCAGCAATGATAAACGAGATTACAAATGTGGAGCATTTT
AATATGTTATATAAGTTCTATAAAGTTATAAGCTCATACATTACCTGAAC
AAGCATGTATACTAAAAACTGCCAATTTATATATTGCTTCTCCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXAGTACTTTTCATCATTTCTCTGATTGGTCAAATATCCCTTGTCC
CCCCCCCTGTTGTTTGCTGGTTCACTGTGCTGCAAAAGATGCATTCCTTC
TGAATTCTCCCTGTTTACTATCCTTTCCTGGCATGGGTTCTTTCCCATAC
TGTCAGGACTGATGAAAAACTGTTACTTCAACAGGAAAATCTGTTACTTC
TCAGGATGTAGTGGGAGCTACATTCCAAGTTAACTCAGCTGGCTGATATA
TATTTTGAACCGGCTTCATAATTGGAATCATACTTACTTTAATACTCTCC
CTCTCCCCCCACTTGACTAACCAACCTTTCAGGCAGCCATTGGGATCTGT
TTACTTAATGAGAAAAAAGACAGACGGGACTTCTCCCCCATATTAAAATG
AACCATTCCATGTATTAGTTAGGGGGTCTCACCATTTAACCATGGCATAT
GAGCTGGAACTGACTGGATACCACTGGCAATCTCCTGCAGACTGACTTTT
AGCATCAGCTTGCCCAACATGTATAACAAATAATACAACAGCCATATGTG
CTTTTGGTGACCTTGGAGCGCAGCATTCCCCTTTTTTGCTCTTAAAGGAA
AAAATGTTCTAAAGTTCCCTAATACCTTGTTCTTGAAAAATATAAGGAAT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_d07.g1 MSMg01no278_d07.g1 CHROMAT_FILE:
MSMg01no278_d07.g1 PHD_FILE: MSMg01no278_d07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:28 2005
         (284 letters)



>mm_chr18_60510157_60510840
          Length = 684

 Score =  507 bits (262), Expect = e-148
 Identities = 277/282 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtacttttcatcatttctctgattggtcaaatatcccttgtccccccccctgttgtttg 60
           ||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||
Sbjct: 482 agtacttttcatcatttctctgattggtcaaatatcccttggcccatcccctgttgtttg 423

                                                                       
Query: 61  ctggttcactgtgctgcaaaagatgcattccttctgaattctccctgtttactatccttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ctggttcactgtgctgcaaaagatgcattccttctgaattctccctgtttactatccttt 363

                                                                       
Query: 121 cctggcatgggttctttcccatactgtcaggactgatgaaaaactgttacttcaacagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 cctggcatgggttctttcccatactgtcaggactgatgaaaaactgttacttcaacagga 303

                                                                       
Query: 181 aaatctgttacttctcaggatgtagtgggagctacattccaagttaactcagctggctga 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 302 aaatctgttacttctcaggatatagtgggagctacattccaagttaactcagctggctga 243

                                                     
Query: 241 tatatattttgaaccggcttcataattggaatcatacttact 282
           || |||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tagatattttgaaccggcttcataattggaatcatacttact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)