BAC Information

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BAC

Clone NameMSMg01-279B18
Chromosome18 (Build37)
Map Location 8,758,493 - 8,758,777
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039606, Wac, LOC665121, LOC225134, LOC665132, EG433158, EG545242
Downstream geneLOC665161, Fzd8, 9430022F06Rik, Ccny, LOC665176, LOC665184, EG639618, LOC100039755, Cetn1, LOC225155, Colec12, LOC665111
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279B18.T7 (MSMg01no279_b18.b1)MSMg01-279B18.TJ (MSMg01no279_b18.g1)
ACCAG416559AG416560
length753765
length of high quality
(start - end)
321 (45 - 365)285 (83 - 367)
definitionCHROMAT_FILE: MSMg01no279_b18.b1 PHD_FILE: MSMg01no279_b18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:37 2005CHROMAT_FILE: MSMg01no279_b18.g1 PHD_FILE: MSMg01no279_b18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCCCCTGTGCCAATGAGTTCAAGGCTCTTTCCTACTTTCTCTTCTA
TTAGATTCAGTGTATCTGGTTTTATGTTGAGATCCTTGATTCACTTGGAC
TTGTGCTTTGTGCAAGGGGACAAATATGAGTCTATTTTCATACAGACAAC
CAGTTAGACCAGCACCATTTATTGAAGATGCTTTCTTGTTCCCATTGCAT
ATTTTTTGGCTTCTTAAGATCCAACAAGCAGCTGCAAGAGTCAGGTATAT
TTGCACAAAACCAATGGACAGAAGCAGCTGATCCCTGGTCTTGAATTAGG
GCAGGCTGAAAGAATCTGATTAGAACGGCGCACCCTGTAGGAGGACCAGC
AGTCACAATTAATCTGGACCCCTGAGATCTCTCTAACACTGGACCACCAA
ACAGGCATCAGCTGATATGAGGCCCCCAACACACATAGAGTAGAGGACTG
CTGGTTCTGTGTTCATTCAGAGATGATGCATCTAACTCTCTAGAGACTGG
AGGTCCCAGGGAGTTTAGAGGTCAGGTGGGGGTGGGGATGGGGACATCCA
CATGGAGAGAAGGGGTGGGGAAGAGGTATGGGATGTTTTNTTATCTNTTT
TTTTTATTTTTTTTATAATTTTTTAATTTTTAATTTTCACGCTTCCTAGC
TTAATTATTTATTATATCCTCTTATTTATTTATCCATTTCATCCTTTCTC
TCT
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCCAGAAAAGCTCTTTA
CTCTGAAAGATTCTGAGGGCAGGAGAAAAGTTACATGCAAGGAAGCAGGC
TTAGTTAATATGTGAAGTGTGCTCCTGATTGAGGCAAAGGAGAAGGCCAT
ACATGGCTTAGGGGTCACTTTTCCTGTGGTTTAGGAGTGGGTCTTAGTTA
ATGTGTAACCCATGCAACACCACAGTTGTCAGGCTGCCTCCACCCTTGGC
AGTGGCAAGACTCTGGGTATATTCCTGCTCTGTTCATAGTCCTCTCTGCT
GTGGAAAGCCTGAGTTCTCTTATTTCTGCCCCCCCCACCCCGGGGGAGAC
AGATGGTGGTCTTGAACTTGGTGGCAGCAGAAAGAACAAGAGCATTCCAA
CATTGGGACCAGAATTCACCTGACATGGCAACAGTCCACAGCTACGCACA
TAAGTCAAGGACAGTTGGGTGTTTATAGATAATTCCACAGTCTCACAAAG
ACTGCAGAAGCTTTCTGTTCTCTACATGTGGCCCCTCTGTGTCACTCTCA
GTGGAATGAGACTGTCGTAGTGGACCCTGCCCACCTCCAATCTTCCCCTA
GGAAATGTCCTGAAATAGTGATTTCAGCTCAACCCTCCATTCAAATCCAG
TATAAGATGGACTCCACCGACTGAAAGAAAGCATTGTGTATAAAGTCGCA
TCCATCAGGACTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_b18.g1 MSMg01no279_b18.g1 CHROMAT_FILE:
MSMg01no279_b18.g1 PHD_FILE: MSMg01no279_b18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:37 2005
         (285 letters)



>mm_chr18_8758293_8758977
          Length = 685

 Score =  536 bits (277), Expect = e-157
 Identities = 283/285 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgccagaaaagctctttactctgaaagattctgagggcaggagaaaagttacatgcaagg 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 tgccagaaaagctctttactctgaaagattctgagggcaggagaaatgttacatgcaagg 260

                                                                       
Query: 61  aagcaggcttagttaatatgtgaagtgtgctcctgattgaggcaaaggagaaggccatac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagcaggcttagttaatatgtgaagtgtgctcctgattgaggcaaaggagaaggccatac 320

                                                                       
Query: 121 atggcttaggggtcacttttcctgtggtttaggagtgggtcttagttaatgtgtaaccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atggcttaggggtcacttttcctgtggtttaggagtgggtcttagttaatgtgtaaccca 380

                                                                       
Query: 181 tgcaacaccacagttgtcaggctgcctccacccttggcagtggcaagactctgggtatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcaacaccacagttgtcaggctgcctccacccttggcagtggcaagactctgggtatat 440

                                                        
Query: 241 tcctgctctgttcatagtcctctctgctgtggaaagcctgagttc 285
           |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 tcctgctctgttcatagtcctctctgctgtggaaggcctgagttc 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)