BAC Information

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BAC

Clone NameMSMg01-280G14
Chromosome18 (Build37)
Map Location 36,549,364 - 36,707,343
singlet/doubletdoublet
Overlap gene0610010O12Rik, Pfdn1, Hbegf, Slc4a9
Upstream geneSil1, LOC100041423, LOC666460, LOC666462, EG383341, EG436583, Matr3, Paip2, Slc23a1, 2010001M09Rik, Gm1614, 5133400G04Rik, Dnajc18, 1110006O17Rik, 1700066B19Rik, 2610307O08Rik, LOC666505, Ube2d2, Cxxc5, LOC100042131, Psd2, LOC100042150, LOC100041531, Pura
Downstream geneLOC624979, Eif4ebp3, Sra1, Apbb3, Slc35a4, E230025N22Rik, Cd14, Tmco6, Ndufa2, Ik, Wdr55, Dnd1, Hars, Hars2, Zmat2, EG627427, Pcdha1, Pcdha@, Pcdha2, Pcdha3, Pcdha4, Pcdha5, Pcdha6, Pcdha7, Pcdha8, Pcdha9, Pcdha10, Pcdha11, Pcdha12, Pcdhac1, Pcdhac2, Pcdhb1, Pcdhb2, Pcdhb3, Pcdhb4, Pcdhb5, Pcdhb6, Pcdhb7, Pcdhb8, Pcdhb9, Pcdhb10, Pcdhb11, Pcdhb12, Pcdhb13, Pcdhb14, Pcdhb15, Pcdhb16, Pcdhb17, Pcdhb18, Pcdhb19, Pcdhb20, Pcdhb21, Pcdhb22
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280G14.T7 (MSMg01no280_g14.b1)MSMg01-280G14.TJ (MSMg01no280_g14.g1)
ACCAG417512AG417513
length745746
length of high quality
(start - end)
235 (127 - 361)284 (76 - 359)
definitionCHROMAT_FILE: MSMg01no280_g14.b1 PHD_FILE: MSMg01no280_g14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:14 2005CHROMAT_FILE: MSMg01no280_g14.g1 PHD_FILE: MSMg01no280_g14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,707,109 - 36,707,343)(36,549,364 - 36,549,647)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGAACCACTGAAGAGGCCAGGCGTTCACATGGCAACCTGGATTTT
AATGCCCACAAAGTTTCTGAACCCCCATTCCACAGGTGCAGACTGGAGAC
AGAAGTCTTAAATGGCTGATATGAAGGGTTGGGAGGCCCTAATAACTCTA
TATACAGCTGCAGGTCTTTCATCTGAAGATTTCAAACAATGTTATAGGCA
TTAATTAATTTTTGCAGCACACAAGACTAAAATTCCATGCTCTTGGCCCT
GTTTTATTGACAGAAAATGGTAGCCTCTGTTGTACAATCATCTGGCATGA
TTGAATGATGAATGATGTTTGTCCCCCCACCCCATCCTGGGTGTGTGAAG
TGCTAAGTGAATGTGTGTGTGTTGACATGATCACAGTCTCAAACTCAGAG
GGAAATAGCAAAGCCTCTCCCTGCCCTGCTGGGGTGAGGCCCAGAGAAAT
GCCTTCCTAGTGGACCCAAGCTTAGACAGACAGTGTGTGCAGAAAATGTC
CGTCGTAGCTTTCTCCTCCCAGATATTTTATGGCGTGAACACTGTTCCCC
TACCAAGTCTGCTCCTATGAAGATTAGCTAAATCCATCTCCTAGATCCAT
CTGCATTCCATAAACATTCACCTCCTTCTTGTTTATCTCTAGGGAATAAC
TCTGCTCACNGTCAATTCTGTATAAGATACACACTGAGCCTCTGG
CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACCTTTGTTTTATTTTGGTTTTTGT
TTGATTGTTTATTGAGACATGGCCCCACTATATAGCTTTGATTGTCCTGG
AACTCACTTTGTAGACCAGGCTGGCACTGAACTCACAAGTACTGGAATTA
AAGGTATGCGTCACCATGCCCATCCCTTAAGGGAGTTCATTCTTAATAGC
CAGTTCCAGCACAGAGAGGTGGGGAAGGGTTAGGATTTTGTGAACCTGAT
TTAGGGGAGAGAGGAGTCCTGGTTCTGTGGTTTGCCTCTGGGCAGGAGTT
AGGAGCCAAGGTATGGTGGTCCACACCCCCCCACTCGAATGTCACATCCA
TAAATATACAGTTGTCACACACCGAGGAACACTAACTGCTTTATCTGAAT
GCCCATCAGCAGAGTCCTGGCAGTCACCCCTACCCTGCTTACTACTTCCT
GCTGCACCTCAGGTTCCTGAGGTAAGGAGAAGAGCGGAGAGATAGAGAGA
GACAGAGGCATCTTCAAGAACACAGTTAGGGGGCCGCCTTTTTGCATATT
GCAGGGTGAGACACAGGACATACTGTTTCAGATACTTTCTATGTCCTCTA
CACTCAGAGAGCTAGTGTGAGCCACTCAAGGGTATGGCAGTGCACACACT
GCCAGGCGTATCTGTGCGCCATGCTGGATGCTGGTATGGCAGACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_g14.b1 MSMg01no280_g14.b1 CHROMAT_FILE:
MSMg01no280_g14.b1 PHD_FILE: MSMg01no280_g14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:14 2005
         (235 letters)



>mm_chr18_36706909_36707543
          Length = 635

 Score =  447 bits (231), Expect = e-130
 Identities = 234/235 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attccacaggtgcagactggagacagaagtcttaaatggctgatatgaagggttgggagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 attccacaggtgcagactggagacagaagtcttaaatggctgatatgaagggttgggagg 376

                                                                       
Query: 61  ccctaataactctatatacagctgcaggtctttcatctgaagatttcaaacaatgttata 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 375 ccctaataactctatatacagctgcaggtctttcatctgaaggtttcaaacaatgttata 316

                                                                       
Query: 121 ggcattaattaatttttgcagcacacaagactaaaattccatgctcttggccctgtttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ggcattaattaatttttgcagcacacaagactaaaattccatgctcttggccctgtttta 256

                                                                  
Query: 181 ttgacagaaaatggtagcctctgttgtacaatcatctggcatgattgaatgatga 235
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ttgacagaaaatggtagcctctgttgtacaatcatctggcatgattgaatgatga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no280_g14.g1 MSMg01no280_g14.g1 CHROMAT_FILE:
MSMg01no280_g14.g1 PHD_FILE: MSMg01no280_g14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:14 2005
         (284 letters)



>mm_chr18_36549164_36549847
          Length = 684

 Score =  511 bits (264), Expect = e-149
 Identities = 279/284 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acctttgttttattttggtttttgtttgattgtttattgagacatggccccactatatag 60
           |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 201 acctttgttttattttggtttttgtttgattgtttattgagacagggcctcactatatag 260

                                                                       
Query: 61  ctttgattgtcctggaactcactttgtagaccaggctggcactgaactcacaagtactgg 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttgattatcctggaactcactttgtagaccaggctggcactgaactcacaagtactgg 320

                                                                       
Query: 121 aattaaaggtatgcgtcaccatgcccatcccttaagggagttcattcttaatagccagtt 180
           ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattaaaggtatgagtcatcatgcccatcccttaagggagttcattcttaatagccagtt 380

                                                                       
Query: 181 ccagcacagagaggtggggaagggttaggattttgtgaacctgatttaggggagagagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccagcacagagaggtggggaagggttaggattttgtgaacctgatttaggggagagagga 440

                                                       
Query: 241 gtcctggttctgtggtttgcctctgggcaggagttaggagccaa 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtcctggttctgtggtttgcctctgggcaggagttaggagccaa 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)