BAC Information

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BAC

Clone NameMSMg01-280H12
Chromosome18 (Build37)
Map Location 40,467,673 - 40,467,919
singlet/doubletsinglet
Overlap geneKctd16
Upstream geneArhgap26, Nr3c1, Pabpc2, LOC100041939, Yipf5
Downstream geneEG225416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280H12.T7 (MSMg01no280_h12.b1)MSMg01-280H12.TJ (MSMg01no280_h12.g1)
ACCAG417552AG417553
length769770
length of high quality
(start - end)
235 (126 - 360)285 (76 - 360)
definitionCHROMAT_FILE: MSMg01no280_h12.b1 PHD_FILE: MSMg01no280_h12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:19 2005CHROMAT_FILE: MSMg01no280_h12.g1 PHD_FILE: MSMg01no280_h12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:19 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTAGGAACATGTCCTTGTTGTATACTTATCCTGCTCCCATTAATT
GGGGTACTCTACTGTGTTTAGGCCACTTGCCATGTCTTAACTTGAAAACC
AGAAAGTCAGTTGTGCATGTACAAGTCTCTTTCTTCCAAGTAAGATGTCA
GTTCCCAGGGAGGCCTCGAGAACTTATACTTTACTCACTCACACCCTACT
CAAAATAGAAGTCTGGTTCGAAGTAGTCTCTGCACTGAATCGGTGGTGCG
GGTGTCTCTCTTTTGTTGGGGTGCGGGGGTCCGTCCCCAGGGCAGCTTCT
AAGAGCAAATGTTAGTAAATTGCCCACCCCCCCCTTGTGCAGGAAATGCT
GCTGGGTGGTCAGTTTGGGTCCAAGCCTATAGAAGATAACTATAGAACAA
AGGAAGCTTCTATTCTGATTGGTTTCCGAGGACACATCCAACAAGAATAT
GTAGTCAATTCTGGCAATAATGGCAGAAACAAGCTATGAGAAAGTGTCCT
TATAATAGTAGTTAACAGCACAAAATGGCAGGCTAGCCAGGTAAGAGGTT
ACCTAGGCCTTATCTAATCTGAAGTAGGCCTTCACATTCCATCTAGGCCT
TAATATTTTACCTATACCTTAACAGCCAGCAGTTTTGCCCTCTGAGCCAT
CGCACATGCATGTTCAGATCAATGAATATCTTTCTCTGTATTCATTTATT
TATGAGAGACAAAGTCTCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTGAACTCACTGTCCTTTCAGGTC
CACATTTGCTCTGGCTCTGGCACCCGACTGAACCAAACAATTAGGCTCAT
ACCTAGAACTTTGGAAATGGTAATGGAGTTGATAACACACCCTAACAGAA
AGAGGAAGGCTCCACTCACTAGTACACTTTCACTAGAAGCCTCGCCCTGT
CAGCAGTTTAGGAATTTGTAAAGCCAATCTGGACAATATTTAAATGGTTT
GGAATTTCTACTTCATGTTTAATTTTTTTTTTTTTTTTTTTTTTTTGAGA
CAGAGTTTCTTNGTAATTTCCCCCCCCCCCCCCAACTCATTTTGTAGACC
AGGCTGGGCTCGAACTCAGAAATACAAAAAAAAAAGCCTCCCGAGGGGTG
TGATTAAAGGCGTGCACCACCACGCCTGGCCCCATGTTTAATGTTTAGCA
AACATTTAATAAACATTTAATAAACATTGTGAAGGTCTGAATAGATGGAT
CAACAGTTAAGAGCATTGACTTTTCTTGCAGAGGTCCTGAGTTCAATTCC
CAGGAATTCCATGGTGCCTTTGGAATCCGATGCACACTTTTGGTGTGTGT
TGGAAGACAGCTTGTGTGATCCTCTTATTCGTTTAAAATTATTAAACTTT
CCTTAATTACTTAAACATCATGACTTGTGTCTAATTGCATACTTTTAATT
TTCATTTTGTTGGTCTGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_h12.g1 MSMg01no280_h12.g1 CHROMAT_FILE:
MSMg01no280_h12.g1 PHD_FILE: MSMg01no280_h12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:19 2005
         (285 letters)



>mm_chr18_40467474_40468157
          Length = 684

 Score =  371 bits (192), Expect = e-107
 Identities = 234/248 (94%), Gaps = 1/248 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgaactcactgtcctttcaggtccacatttgctctggctctggcacccgactgaacca 60
           |||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||
Sbjct: 446 tctgaactcactgtcctttcaggtccacctttgctctggctctggcaactgactgaacca 387

                                                                       
Query: 61  aacaattaggctcatacctagaactttggaaatggtaatggagttgataacacaccctaa 120
           ||||| |||||||||||||||| ||| | |||||||||||||||||| ||||||| ||||
Sbjct: 386 aacaa-taggctcatacctagatcttcgaaaatggtaatggagttgaaaacacactctaa 328

                                                                       
Query: 121 cagaaagaggaaggctccactcactagtacactttcactagaagcctcgccctgtcagca 180
           ||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||
Sbjct: 327 cagaaagaggaaggctccactcactagaagactttcactagaagcctcgccctgccagca 268

                                                                       
Query: 181 gtttaggaatttgtaaagccaatctggacaatatttaaatggtttggaatttctacttca 240
           ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 267 gtttaggaatttgtaaagccaatctggacaatatttacatgatttggaatttctacttca 208

                   
Query: 241 tgtttaat 248
           ||||||||
Sbjct: 207 tgtttaat 200


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 684
Length adjustment: 9
Effective length of query: 276
Effective length of database: 675
Effective search space:   186300
Effective search space used:   186300
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)