MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-280P18
Chromosome	18 (Build37)
Map Location	81,315,092 - 81,315,384
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Pard6g, Zfp508, LOC665009, LOC100039311, 1110032A13Rik, Txnl4, 1810005K13Rik, Pqlc1, Kcng2, D330025C20Rik, Ctdp1, LOC669389, LOC100039336, A430076E10Rik, LOC100039348, Nfatc1, Atp9b, Sall3, LOC665124
Downstream gene	LOC100039458, LOC100040871
Link	Open Mouse BAC browser

Click to get alignment info.

name	Pard6g (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:93737 MGI:2135606
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Zfp508 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:240442 MGI:2448562
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 mRNAs, 103 ESTs, 5 Proteins

name	LOC665009 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665009
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 10 Proteins pseudo : _no_value

name	LOC100039311 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039311
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	1110032A13Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68731 MGI:1915981
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Txnl4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:27366 MGI:1351613
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 4 mRNAs

name	1810005K13Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66255 MGI:1913505
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 5 ESTs, 1 Protein

name	Pqlc1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66943 MGI:1914193
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Kcng2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:240444 MGI:3694646
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 17 ESTs, 65 Proteins

name	D330025C20Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:665054 MGI:3588219
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs

name	Ctdp1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67655 MGI:1926953
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC669389 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:669389
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs

name	LOC100039336 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039336
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins

name	A430076E10Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:225770 MGI:3045375
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	LOC100039348 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039348
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	Nfatc1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18018 MGI:102469
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Atp9b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:50771 MGI:1354757
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sall3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20689 MGI:109295
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC665124 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665124
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	LOC100039458 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039458
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins

name	LOC100040871 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040871
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Pard6g (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31543459 GeneID:93737 MGI:2135606
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : par-6 partitioning defective 6 homolog gamma (C. elegans) transcript_id : NM_053117.2

name	Zfp508 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149270202 GeneID:240442 MGI:2448562
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 mRNAs, 103 ESTs, 5 Proteins product : zinc finger protein 508 transcript_id : XM_140497.7

name	1110032A13Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40353223 GeneID:68731 MGI:1915981
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1110032A13 gene transcript_id : NM_199197.1

name	Txnl4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:109255208 GeneID:27366 MGI:1351613
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : thioredoxin-like 4 transcript_id : NM_025299.3

name	Txnl4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:109255211 GeneID:27366 MGI:1351613
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : thioredoxin-like 4 transcript_id : NM_001038608.2

name	Txnl4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:109255209 GeneID:27366 MGI:1351613
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : thioredoxin-like 4 transcript_id : NM_178604.3

name	Txnl4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:109255213 GeneID:27366 MGI:1351613
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : thioredoxin-like 4 transcript_id : NM_001042408.1

name	1810005K13Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94405072 GeneID:66255 MGI:1913505
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 5 ESTs, 1 Protein product : RIKEN cDNA 1810005K13 gene, transcript variant 1 transcript_id : XM_885191.2

name	Pqlc1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142382679 GeneID:66943 MGI:1914193
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : PQ loop repeat containing 1 transcript_id : NM_025861.2

name	Kcng2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94405073 GeneID:240444 MGI:3694646
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 17 ESTs, 65 Proteins product : potassium voltage-gated channel, subfamily G, member 2 transcript_id : XM_140499.7

name	D330025C20Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94405074 GeneID:665054 MGI:3588219
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs product : RIKEN cDNA D330025C20 gene transcript_id : XM_974210.1

name	Ctdp1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34328279 GeneID:67655 MGI:1926953
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1 transcript_id : NM_026295.2

name	LOC669389 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149270226 GeneID:669389
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs product : hypothetical LOC669389 transcript_id : XM_001476012.1

name	LOC100039336 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149270204 GeneID:100039336
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins product : similar to glutamine repeat protein 1 transcript_id : XM_001472711.1

name	Nfatc1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:38348192 GeneID:18018 MGI:102469
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1 transcript_id : NM_198429.1

name	Nfatc1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131200 GeneID:18018 MGI:102469
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1 transcript_id : NM_016791.3

name	Atp9b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40807501 GeneID:50771 MGI:1354757
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ATPase, class II, type 9B transcript_id : NM_015805.2

name	Sall3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:54144639 GeneID:20689 MGI:109295
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sal-like 3 (Drosophila) transcript_id : NM_178280.3

name	LOC100039458 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149270206 GeneID:100039458
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins product : similar to mucin transcript_id : XM_001472920.1

name	LOC100040871 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149270229 GeneID:100040871
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100040871 transcript_id : XM_001476173.1

name	Zfp508 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149270203 GeneID:240442 MGI:2448562
definition	codon_start : 1 product : zinc finger protein 508 protein_id : XP_140497.5

name	1110032A13Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40353224 CCDS:CCDS29364.1 GeneID:68731 MGI:1915981
definition	GO_component : GO:0005739 - mitochondrion [Evidence IEA] codon_start : 1 product : hypothetical protein LOC68731 protein_id : NP_954667.1

name	Txnl4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13384656 CCDS:CCDS29365.1 GeneID:27366 MGI:1351613
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005682 - snRNP U5 [Evidence TAS] [Evidence ISS]; GO:0005681 - spliceosome complex [Evidence ISS] [Evidence IEA] GO_function : GO:0008080 - N-acetyltransferase activity [Evidence IEA]; GO:0031202 - RNA splicing factor activity, transesterification mechanism [Evidence ISS]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0007067 - mitosis [Evidence IEA] [Evidence ISS]; GO:0006397 - mRNA processing [Evidence IEA]; GO:0000398 - nuclear mRNA splicing, via spliceosome [Evidence IEA]; GO:0000245 - spliceosome assembly [Evidence ISS] codon_start : 1 note : isoform a is encoded by transcript variant 1; dim1 product : thioredoxin-like 4 isoform a protein_id : NP_079575.1

name	Txnl4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:109255212 GeneID:27366 MGI:1351613
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005682 - snRNP U5 [Evidence TAS] [Evidence ISS]; GO:0005681 - spliceosome complex [Evidence ISS] [Evidence IEA] GO_function : GO:0008080 - N-acetyltransferase activity [Evidence IEA]; GO:0031202 - RNA splicing factor activity, transesterification mechanism [Evidence ISS]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0007067 - mitosis [Evidence IEA] [Evidence ISS]; GO:0006397 - mRNA processing [Evidence IEA]; GO:0000398 - nuclear mRNA splicing, via spliceosome [Evidence IEA]; GO:0000245 - spliceosome assembly [Evidence ISS] codon_start : 1 note : isoform b is encoded by transcript variant 3; dim1 product : thioredoxin-like 4 isoform b protein_id : NP_001033697.2

name	Txnl4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:109255214 GeneID:27366 MGI:1351613
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005682 - snRNP U5 [Evidence TAS] [Evidence ISS]; GO:0005681 - spliceosome complex [Evidence ISS] [Evidence IEA] GO_function : GO:0008080 - N-acetyltransferase activity [Evidence IEA]; GO:0031202 - RNA splicing factor activity, transesterification mechanism [Evidence ISS]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0007067 - mitosis [Evidence IEA] [Evidence ISS]; GO:0006397 - mRNA processing [Evidence IEA]; GO:0000398 - nuclear mRNA splicing, via spliceosome [Evidence IEA]; GO:0000245 - spliceosome assembly [Evidence ISS] codon_start : 1 note : isoform b is encoded by transcript variant 4; dim1 product : thioredoxin-like 4 isoform b protein_id : NP_001035867.1

name	Txnl4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:109255210 GeneID:27366 MGI:1351613
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005682 - snRNP U5 [Evidence TAS] [Evidence ISS]; GO:0005681 - spliceosome complex [Evidence ISS] [Evidence IEA] GO_function : GO:0008080 - N-acetyltransferase activity [Evidence IEA]; GO:0031202 - RNA splicing factor activity, transesterification mechanism [Evidence ISS]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0007067 - mitosis [Evidence IEA] [Evidence ISS]; GO:0006397 - mRNA processing [Evidence IEA]; GO:0000398 - nuclear mRNA splicing, via spliceosome [Evidence IEA]; GO:0000245 - spliceosome assembly [Evidence ISS] codon_start : 1 note : isoform b is encoded by transcript variant 2; dim1 product : thioredoxin-like 4 isoform b protein_id : NP_848719.2

name	1810005K13Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82997532 GeneID:66255 MGI:1913505
definition	codon_start : 1 product : hypothetical protein LOC66255 isoform 1 protein_id : XP_890284.1

name	Pqlc1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21313218 CCDS:CCDS29367.1 GeneID:66943 MGI:1914193
definition	codon_start : 1 exception : mismatches in translation product : PQ loop repeat containing 1 protein_id : NP_080137.1

name	Kcng2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82997534 GeneID:240444 MGI:3694646
definition	codon_start : 1 product : similar to cardiac potassium channel subunit (Kv6.2) protein_id : XP_140499.6

name	D330025C20Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94405075 GeneID:665054 MGI:3588219
definition	codon_start : 1 product : hypothetical protein LOC665054 protein_id : XP_979304.1

name	Ctdp1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34328280 CCDS:CCDS29368.1 GeneID:67655 MGI:1926953
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : CTD (carboxy-terminal domina, RNA polymerase II, polypeptide A) phosphatase, subunit 1 product : CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1 protein_id : NP_080571.2

name	LOC669389 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149270227 GeneID:669389
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001476062.1

name	LOC100039336 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149270205 GeneID:100039336
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001472761.1

name	Nfatc1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38348193 GeneID:18018 MGI:102469
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0006816 - calcium ion transport [Evidence IMP]; GO:0001837 - epithelial to mesenchymal transition [Evidence IMP]; GO:0000082 - G1/S transition of mitotic cell cycle [Evidence IMP]; GO:0007507 - heart development [Evidence IMP]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; transcription factor NF-ATc; nuclear factor of activated T-cells, cytoplasmic 1 product : nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1 isoform 2 protein_id : NP_940821.1

name	Nfatc1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560459 CCDS:CCDS29369.1 GeneID:18018 MGI:102469
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0006816 - calcium ion transport [Evidence IMP]; GO:0001837 - epithelial to mesenchymal transition [Evidence IMP]; GO:0000082 - G1/S transition of mitotic cell cycle [Evidence IMP]; GO:0007507 - heart development [Evidence IMP]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; transcription factor NF-ATc; nuclear factor of activated T-cells, cytoplasmic 1 product : nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1 isoform 1 protein_id : NP_058071.2

name	Atp9b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40807502 CCDS:CCDS29370.1 GeneID:50771 MGI:1354757
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATPase activity [Evidence IEA]; GO:0015662 - ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004012 - phospholipid-translocating ATPase activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0006812 - cation transport [Evidence IEA]; GO:0008152 - metabolism [Evidence IEA] codon_start : 1 note : ATPase, class 2, member b; ATPase 9B, p type; ATPase 9B, class II; macrophage MHC receptor product : ATPas, class II, type 9B protein_id : NP_056620.2

name	Sall3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:54144640 CCDS:CCDS29371.1 GeneID:20689 MGI:109295
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : spalt-like protein 3 product : sal-like protein 3 protein_id : NP_840064.2

name	LOC100039458 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149270207 GeneID:100039458
definition	codon_start : 1 product : similar to mucin protein_id : XP_001472970.1

name	LOC100040871 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149270230 GeneID:100040871
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001476223.1

name	LOC100039311 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039311
definition	number : 2 pseudo : _no_value

name	LOC100039311 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039311
definition	number : 1 pseudo : _no_value

name	LOC100039348 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039348
definition	number : 3 pseudo : _no_value

name	LOC100039348 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039348
definition	number : 2 pseudo : _no_value

name	LOC100039348 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039348
definition	number : 1 pseudo : _no_value

name	LOC665124 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665124
definition	number : 1 pseudo : _no_value

name	LOC665009 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149270225 GeneID:665009
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 10 Proteins product : similar to Phosphoglycerate mutase 1 (brain) pseudo : _no_value transcript_id : XR_032298.1

name	A430076E10Rik (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149270228 GeneID:225770 MGI:3045375
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : RIKEN cDNA A430076E10 gene transcript_id : XR_035263.1

clone name	MSMg01-395C02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-057J11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-134K21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-317A08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-053D04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-137C22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-539J22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-509J02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-475J08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-482P03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-532K17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-105G14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-317J14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-088D11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-293O07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-446F14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-170G18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-147E02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-441H07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-448O09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-339K18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-343N10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-296L22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-108B02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-295N09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-085H01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-367D17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-366D07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-195H09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-487D13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-507F22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-503M11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-503M10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-437O22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-402F14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-384L03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-289K04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-207K02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-463E06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-474E17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-072B07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-430H02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-272N15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-443F08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-476N16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-218P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-135O09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-485B20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-097N04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-134F07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-316H21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-533B18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-094N16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-108G19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-450K01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-503L01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-433A12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-350E18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-342M12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-066D07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-379B02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-091B24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-488D22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-176E24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-480D15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-105M11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-098D17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-118D22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-280P18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-273E14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-111E16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-094J02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-052F04
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-292A12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-428P04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-479O02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-526M12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-476I03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-306L01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-432E13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-325P19
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-385I03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-100M17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-132M14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-078P17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-430M04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-143B10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-126O18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-445B22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-439C05
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-384O07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-110J11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-509K02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-188G16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-269J16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-317A12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-488D08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-070O05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-122K05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-370K01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-088H13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-483F04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-116J02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-298J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144G17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-056P22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-270A23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061O08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-299F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184G14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-182E04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-272O11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323I13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-165B03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110J03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-016B01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-058F09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-242P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-064J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028P02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199I17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239K13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-149P10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-339B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-174A22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-294F07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-273H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132G21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-066I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173P04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-207G22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076M19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-024B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-336K14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239A18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176I13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-046G23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322L02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-098B03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-047M08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-091K06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-180K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-253C20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-244B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-328N07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044G02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-187B24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-254A17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114C01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-328O21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-036B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-290E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117J09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-053O14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-146L17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-300G04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-170F18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212C16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-234A06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-016P24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-277G10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-283B15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-105N12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-161A14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-318I14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-118E18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-025A07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072D12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-038B17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194J24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297H15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-264K06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-133K10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-221B02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-230H19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-249N20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-038H02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-247N11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-285L22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-101B02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-203A24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306L22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199F20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-307O12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-200J23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-075I07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-049O22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-247M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-340I06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-301L20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-273L14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-202B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186P22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-096A14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-347O07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-248B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198N11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-026O17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297E18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-170A07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-229C03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-261L13
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-280P18.T7 (MSMg01no280_p18.b1)	MSMg01-280P18.TJ (MSMg01no280_p18.g1)
ACC	AG417932	AG417933
length	781	727
length of high quality (start - end)	287 (45 - 331)	293 (435 - 727)
definition	CHROMAT_FILE: MSMg01no280_p18.b1 PHD_FILE: MSMg01no280_p18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:57 2005	CHROMAT_FILE: MSMg01no280_p18.g1 PHD_FILE: MSMg01no280_p18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:57 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA ATTCTACACAGCAGATCCTGTCCTCATCCTTGCCATCTCAGACATGACCC ACAATTTGTCCCAAAGCAGTTCCAAATTTTTAATAAAATGCAATTGCATC TCTCCCTCTCTTCCCCCCAACCCCCTCCATCTCACACCCGTTGCTTGCCT CTCTCTCTCTCTCTCCATATGTATATATACATATATATATATATGTATAC ACACACACACACAAACACACACACATATATATATACACATATATGTGTGT GTGTATGTGTGGTGTGGGTGTGGTGTGTGTGGNAAANAAAAAAAAAAAAA AAAATTTTTAATTACCTTTCCCAAACCACCCCCANNTTTTTTTTTTTTTT TTTTTNTTTTTTTTTCCCCCAAAAAAAAAAAAAAAAAAACGGGGGGGGGG GGGGTCATCTACTTCTATAATACTCTAAAACTCACATTCTATAAACAATA ATCAACATTCTATCCACCACCATAATAAATACTCTCTTATTTTTCACAAT ATCTATCATAAAACAGTACTACATCCTCACATCCACCATAATATTATTTT CATATATTTTTACCCTTAATTAACAATTTTACTATTTAATTTATTTATAA ATCACCTTTAAAATACTATTATCCGCTTTACTTACTCGAACAATCTCTTA ATATATATTATACTTTACCTTACTTACTACTTAATTGCTAGATTTTATTA ATTATATCCCAATTTATACCTACTTAATTAA	CCATTGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXTTATCAAAAAAATTCCACAGACGAAGAAGACCAATATCCA GCTCTCGTAGACAGATTTTTCCCCCCCTTCCTTGGCCTTTTGGTTTTAGG TATGCACTGGTGTATCAGATGATGCCCACCCCCCACATTGGAGAAGGCCA TCTGCTTGACTCATCCACTGAGTTAAATACTTGTCTTCTCCAGAGGCAAC TTCAGAAAAGGAGAAGTAATGTTTGCCAGATATCTGTGCATATTAGTCAC AGTAAAGACTCAAAATATGTTATCAAAATAAATAAATAAATAAATAAATA AATAAATATTTAATTTTTTCCCACCCACCACAAGGACTTATTTTGGCTCA CAGTGGCAGAGATTCAGCTCATCATAACAAAGAGGAAGCAGAGGAACAAA CTCACATCCCGGTAGACAGGATGCAAAAAGAGAGAAAATGGCTTTATTAA GAGGATATCTCCTCCCTTTTCCCTTTGATTTCACCAGGGACCCCCTACCT AGACAATCCTGGCATCCACATTCAAAGCATCTAGTTAACCGTCTCTAGAA AAGCCCTCAAGGGTCCATCCATGTACACGTGTGATTTATTTATCGCTCAG GCTCCCCTCAATCCAATCAAGTTGGCAATCAATAGTAACCACCACACTGA GCCTCCCCTGGCTTCATTGTACACATA
quality values	Open. Hide. 8 10 8 8 8 11 11 28 36 34 29 29 28 22 22 32 37 37 37 37 26 29 30 30 25 21 11 9 9 21 19 43 39 40 40 43 43 48 48 48 48 37 42 42 42 43 68 68 47 42 42 41 50 50 51 51 50 50 50 41 42 42 30 30 30 44 44 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 51 51 51 47 47 51 47 47 47 47 57 47 47 47 47 42 42 42 38 57 57 57 57 36 36 33 32 26 19 15 15 12 15 9 9 12 13 15 19 30 34 41 50 59 59 59 59 59 59 57 53 53 53 53 53 53 53 53 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 57 57 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 48 48 48 43 43 43 39 35 39 35 39 39 21 28 21 17 17 18 28 28 34 36 30 23 12 3 0 3 8 3 0 3 6 7 8 10 6 6 8 7 9 9 10 9 10 11 11 9 9 9 9 12 6 6 6 6 6 6 6 6 6 8 6 9 9 9 6 6 6 6 6 6 6 15 12 12 11 3 0 0 3 23 23 47 32 23 10 8 8 8 13 15 10 8 8 8 8 9 3 0 3 18 10 11 8 9 8 6 6 6 7 6 8 8 8 10 12 14 15 23 14 19 19 19 26 26 14 14 18 16 11 10 10 10 10 10 15 18 21 24 25 13 17 13 13 12 10 15 8 8 7 6 8 8 8 8 8 8 8 8 8 10 9 8 8 8 8 8 10 10 12 18 12 15 13 8 8 8 10 10 11 9 10 10 9 10 9 10 11 10 10 10 11 11 9 10 9 8 8 8 8 8 6 6 8 8 8 8 8 6 8 8 8 10 8 8 8 9 10 12 8 8 8 8 8 9 13 13 10 9 10 13 13 14 19 10 10 8 9 9 8 8 10 8 8 8 8 7 6 8 10 10 6 6 8 12 13 11 9 9 9 17 17 19 11 10 9 7 8 8 10 9 9 9 9 12 10 12 8 10 8 8 8 8 8 8 8 8 10 10 10 16 24 10 10 10 10 8 8 13 13 11 10 8 8 6 6 8 8 11 10 10 10 8 8 8 9 9 11 11 12 13 12 13 8 8 8 8 9 8 8 8 7 8 8 13 13 12 8 8 8 8 9 8 8 8 8 8 8 8 8 8 8 8 13 9 9 9 9 6 8 6 6 8 8 8 11 6 6 8 8 8 8 8 8 8 8 8 8 8 8 7 7 8 8 8 8 6 6 8 8 10 12 8 8 8 8 8 6 6 8 8 8 8 8 10 8 8 8 10 8 8 6 6 11 11 11 17 10 10 10 10 10 8 8 6 6 8 10 8 8 8 8 8 8 6 7 8 6 8 8 8 8 10 7 7 12 8 8 8 8 8 8 10 10 10 10 10 10 9 10 11 10 10 10 12 9 9 9 9 8 8 8 8 8	Open. Hide. 10 10 8 8 8 8 8 8 8 15 13 26 27 28 32 29 30 44 39 39 41 41 41 40 41 41 41 41 23 21 10 8 6 8 8 8 8 12 13 14 20 14 13 22 15 19 32 37 36 36 33 33 33 33 37 25 23 8 8 6 6 6 6 7 7 7 9 10 12 13 20 25 30 25 25 29 24 29 31 53 53 57 59 59 59 59 59 53 53 57 53 53 53 53 47 57 42 42 36 36 36 36 57 57 53 53 50 50 59 33 33 21 21 11 13 14 9 8 8 8 8 9 9 15 13 17 19 33 47 59 59 46 48 48 53 50 57 59 59 59 57 57 57 57 57 50 57 57 57 53 53 50 50 68 68 68 68 68 68 68 68 47 68 68 53 50 50 54 54 53 53 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 68 57 57 68 68 68 68 59 59 54 54 54 57 57 44 39 35 35 37 48 48 68 68 68 68 68 59 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 57 48 48 48 48 48 48 50 50 50 53 53 57 59 57 57 57 57 57 57 57 50 50 59 31 41 24 20 10 10 10 10 11 11 12 21 30 34 41 50 50 59 59 59 59 59 59 57 57 57 57 57 57 59 59 59 59 59 59 59 59 59 41 24 15 9 8 6 7 6 6 6 6 7 7 9 10 10 8 9 10 10 10 17 12 11 10 10 8 8 10 8 15 30 34 48 53 53 59 59 59 59 59 59 59 57 57 57 57 53 50 50 50 57 43 44 43 43 43 47 47 59 59 39 37 31 28 20 25 19 15 15 12 12 12 11 11 11 14 12 16 11 12 12 30 28 41 40 43 40 40 47 43 43 43 43 43 43 39 40 39 35 35 43 47 43 48 48 57 48 48 54 48 48 43 46 46 48 48 47 48 47 47 47 57 54 57 57 57 57 68 68 68 68 68 59 59 57 57 57 54 54 57 57 57 59 59 59 54 54 54 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 57 57 59 59 57 57 57 57 57 57 57 57 57 57 68 50 50 50 48 48 48 54 57 57 57 54 54 43 44 42 47 42 46 46 54 54 59 59 57 57 57 57 57 48 57 48 48 57 57 59 59 57 57 57 59 59 59 59 59 59 47 37 37 37 33 32 32 32 30 34 35 36 39 37 37 41 37 32 32 28 27 30 29 29 37 39 39 41 40 41 41 48 43 43 43 43 48 57 48 48 37 41 23 23 23 31 34 43 46 48 43 43 43 43 48 48 57 48 48 59 48 46 46 46 39 39 39 39 37 26 30 30 37 37 37 39 43 43 43 43 33 30 28 28 28 30 37 39 39 38 32 34 39 39 37 31 29 32 17 17 10 10 10 23 21 30 30 33 33 33 39 39 35 35 24 30 24 26 14 30 26 34 19 18 11 11 18 17 17 22 27 22 30 23 23 18 20 23 25 30 39 39 37 35 31 26

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no280_p18.b1 MSMg01no280_p18.b1 CHROMAT_FILE:
MSMg01no280_p18.b1 PHD_FILE: MSMg01no280_p18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:57 2005
         (287 letters)



>mm_chr18_81315014_81315700
          Length = 687

 Score =  342 bits (177), Expect = 1e-98
 Identities = 257/297 (86%), Gaps = 25/297 (8%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctacacagcagatcctgtcctcatccttgccatctcagacatgacccacaattt 63
           |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 371 ggaattctacacagcagatcgtgtcctcatccctgccatctcagacatgacccacaattt 312

                                                                       
Query: 64  gtcccaaagcagttccaaatttttaataaaatgcaattgcatctctccctctcttccccc 123
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gtcccaaagcagttttaaatttttaataaaatgcaattgcatctctccctctcttccccc 252

                                                                       
Query: 124 caaccccctccatctcacacccgttgcttgcctctctctctctctctc------------ 171
           |||||||||||||||||||| |||||||||||||||||||||||||||            
Sbjct: 251 caaccccctccatctcacactcgttgcttgcctctctctctctctctctctctctctctc 192

                                                                       
Query: 172 ------catatgtatatatacatatatatatatatgtatacacacac--acacacaaaca 223
                 |||||||||||||||||||||||||||  ||||| | | |   | | |||  ||
Sbjct: 191 tctctccatatgtatatatacatatatatatat--gtatatatatatgtatataca--ca 136

                                                                    
Query: 224 cacacacatatatatatacacatatatgtgtgtgtgtatgtgtggtgtg-ggtgtgg 279
           |||||||||||||||| ||| |||||||||||||||| || |||||||| |||||||
Sbjct: 135 cacacacatatatatacacatatatatgtgtgtgtgtgtgagtggtgtgtggtgtgg 79


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information