BAC Information

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BAC

Clone NameMSMg01-288L13
Chromosome18 (Build37)
Map Location 31,800,510 - 31,800,747
singlet/doubletsinglet
Overlap geneSap130
Upstream geneRit2, EG666130, Syt4, LOC383420, Slc25a46
Downstream geneLOC640549, Ammecr1l, Polr2d, EG626327, Wdr33, Sft2d3, Lims2, Gpr17, Myo7b, Iws1, Proc, LOC546710, Map3k2, Ercc3, Bin1, Gypc, LOC100041160, LOC100041170
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-288L13.T7 (MSMg01no288_l13.b1)MSMg01-288L13.TJ (MSMg01no288_l13.g1)
ACCAG418470AG418471
length757754
length of high quality
(start - end)
---240 (129 - 368)
definitionCHROMAT_FILE: MSMg01no288_l13.b1 PHD_FILE: MSMg01no288_l13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:52 2005CHROMAT_FILE: MSMg01no288_l13.g1 PHD_FILE: MSMg01no288_l13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXN
TCGATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAATGACTTCTATAGAAACCTCAGCAC
TCCTGAGCAGAATGGTGATGTAAATCTTAATGCTTAACTTTCTAAGAGAC
TACCAACTACTTTCCAAAGCAACTGTACCATTTTACACTTCTGCCAGCAG
TGTTAGTGTATACCAGGCACTCCTCAGCCCCAGAGTCTTGATACACACAC
GGCCATTCCATGGGTGGAGAGTACTTAAGTATCATTAGGGCTCTAGTTAG
GATTGCCACTATGACTAGCGATGCTAAATAGTTTTTATATGACCAAAAGT
CATTTAGTCTTCTTTATTTTTATATACGCCCCCCCCTTAACCATTTATAA
TCAATCAGCTTTACTAAGGACCAACCCACTAATATAAAATCCACTAATTC
AATAAGATATGCTAATAAAAAATCCACCAATTCTGTATAAAATGAAAACT
TTTAAAATCTATAATGTTATAACCACAACTATACAGAACTCTGTCCATCA
CTGTTGTTTTATATGCTCTGCCCAGGGAGTGGCACTATTAGAAGGTGTGG
CCCTGTTGGAGTAGGTGTCATTGTGGCTGTAGGCTTTAAGACCCTCATCC
TAGCTGCCTGGAAGCCAGTATTTTGCTAGCAGCCTTCAGATCAGCTCATC
CTGCACCATGCCTGCCTGGATGCTGCCATATTTTCACCTTGGTGATAATG
ACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no288_l13.g1 MSMg01no288_l13.g1 CHROMAT_FILE:
MSMg01no288_l13.g1 PHD_FILE: MSMg01no288_l13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:52 2005
         (240 letters)



>mm_chr18_31800207_31800846
          Length = 640

 Score =  460 bits (238), Expect = e-134
 Identities = 238/238 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatgcttaactttctaagagactaccaactactttccaaagcaactgtaccattttacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aatgcttaactttctaagagactaccaactactttccaaagcaactgtaccattttacac 482

                                                                       
Query: 61  ttctgccagcagtgttagtgtataccaggcactcctcagccccagagtcttgatacacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttctgccagcagtgttagtgtataccaggcactcctcagccccagagtcttgatacacac 422

                                                                       
Query: 121 acggccattccatgggtggagagtacttaagtatcattagggctctagttaggattgcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 acggccattccatgggtggagagtacttaagtatcattagggctctagttaggattgcca 362

                                                                     
Query: 181 ctatgactagcgatgctaaatagtttttatatgaccaaaagtcatttagtcttcttta 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ctatgactagcgatgctaaatagtttttatatgaccaaaagtcatttagtcttcttta 304


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)