Query= MSMg01no288_o01.b1 MSMg01no288_o01.b1 CHROMAT_FILE:
MSMg01no288_o01.b1 PHD_FILE: MSMg01no288_o01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:04 2005
(598 letters)
>mm_chr18_21240276_21241273
Length = 998
Score = 1079 bits (558), Expect = 0.0
Identities = 587/600 (97%), Gaps = 6/600 (1%)
Strand = Plus / Minus
Query: 5 gaattcttaagctatcctggtttctaaacaattgttccccaagactgggctgcattttgg 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 gaattcttaagctatcatggtttctaaacaattgttccccaagactgggctgcattttgg 764
Query: 65 ccatccactcactcactaccttcctcttagtcactaagagccatgactatgaagtgatgc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 ccatccactcactcactaccttcctcttagtcactaagagccatgactatgaagtgatgc 704
Query: 125 atgtgaggtacaatgactacacacatgccaagtgagcactctccaacatgagctacatgc 184
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 atgtgaggtacaatggctacacacatgccaagtgagcactctccaacatgagctacatgc 644
Query: 185 ccagcccaggaaatgactgattcttaaggagacattattttttattccccccaccccacc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 ccagcccaggaaatgactgattcttaaggagacattattttttattccccccaccccacc 584
Query: 245 cccaaaggtatctttcggattgacatttgtcatatgcaagaattgctttcccagtccaca 304
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 583 cccaaaggtatctttcggattgacatttgtcagaggcaagaattgctttcccagtccaca 524
Query: 305 gagaagatgagctcgctacaggtagcctgggctgctttgtgttctttgtgtctttctgtc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 gagaagatgagctcgctacaggtagcctgggctgctttgtgttctttgtgtctttctgtc 464
Query: 365 atctctacacacctgtctctctgccggtgtctgcctctctctgtcaccctctgtgtctct 424
||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 atctctatatatctgtctctctgccggtgtctgcctctctctgtcaccctctgtgtctct 404
Query: 425 ctgtatatgctactgtctgtctctctgtctctgtctctctttgactctctttctctgtct 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ctgtatatgctactgtctgtctctctgtctctgtctctctttgactctctttctctgtct 344
Query: 485 ctctgtctttgtctctgtctgtctctgtctctgtctct------gtctctgtctctctct 538
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 343 ctctgtctttgtctctgtctgtctctgtctctgtctctatctctgtctctgtctctctct 284
Query: 539 cctgtatgggctcccgcctcaggttcaggatcaccctgcctttccttctgcaggactacc 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 cctgtatgggctcccgcctcaggttcaggatcaccctgcctttccttctgcaggactacc 224
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 70
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space: 580944
Effective search space used: 580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no288_o01.g1 MSMg01no288_o01.g1 CHROMAT_FILE:
MSMg01no288_o01.g1 PHD_FILE: MSMg01no288_o01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:04 2005
(231 letters)
>mm_chr18_21082413_21083043
Length = 631
Score = 337 bits (174), Expect = 5e-97
Identities = 207/218 (94%), Gaps = 2/218 (0%)
Strand = Plus / Plus
Query: 4 acctctggaagagcagat-ggtgcttttaactactgaaccttttccccagttcccatcct 62
|||||||||||||||| | |||||||||||||||||| || | || ||||||||||||||
Sbjct: 204 acctctggaagagcag-tcggtgcttttaactactgagccatctctccagttcccatcct 262
Query: 63 tgctctctttaactgcatttctggatactggaaccttgtcccttgggacttcctagatcc 122
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 263 tcctctctttaactgcatttctggatactggaaccttgtcccttgggacatcctagatcc 322
Query: 123 aggttttgcccttatgctggtatcagtaggtcctattctattgcttctgctgtcattatt 182
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 323 aggttttgcccttatgctggtatcagtaggtcctagtctattgcttctgctgtcatcatt 382
Query: 183 tatggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 220
| ||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 420
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 631
Length adjustment: 9
Effective length of query: 222
Effective length of database: 622
Effective search space: 138084
Effective search space used: 138084
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
