BAC Information

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BAC

Clone NameMSMg01-289A18
Chromosome18 (Build37)
Map Location 43,742,650 - 43,742,909
singlet/doubletsinglet
Overlap geneJakmip2
Upstream geneLOC100042037, Ppp2r2b, LOC100042046, LOC100042051, EG666594, Stk32a, Dpysl3, LOC100042074, LOC100042807
Downstream geneSpink3, Scgb3a2, Gm94, Spink5, EG433178, LOC666969, EG433180, Spink12, LOC100042855, 9530002K18Rik, Spink11, Npy6r, Myot, Dcp2, Mcc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-289A18.T7 (MSMg01no289_a18.b1)MSMg01-289A18.TJ (MSMg01no289_a18.g1)
ACCAG418709AG418710
length754751
length of high quality
(start - end)
321 (42 - 362)290 (72 - 361)
definitionCHROMAT_FILE: MSMg01no289_a18.b1 PHD_FILE: MSMg01no289_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:17 2005CHROMAT_FILE: MSMg01no289_a18.g1 PHD_FILE: MSMg01no289_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATCACTTTTACACTAAATGGAAATAAGACTGAGTACCTTATCCGGGAAA
ATGTCACCTCAGGTCTCATGAGTCTATTCATGAAAAATAAAACCATAAGA
AGTAAGGGCTGTCAAGTCTTCTCATTTTCAAGTCACCCAGTAAGAACATG
CAAGGACACTTCCACATAATTTACCAACAGCTTCCTAAATATAGGAAACA
GTAGCTACCATCACAAATGTTACAAAAATCCAATCACAAAATAATATCTT
CCCCAATATGTACATTTAGAATCTGGCCAGAAAAGAGAATGACTTACGCA
AAGATATGGTTTTTTTTCCAGATCCCCCGCGGATTCGATAATGAGACATC
AAGACCTTGGGATTGCCACCTCATTACCTACTACACTAGAATGCCTGTCT
GTTGGAAAAGGCAGTATACTTCACCAGTTCAGGCTGCTCAATCGGCTGTA
GGGCTCAGTTCCAGTGTCTACAGAACTCTTGAGCCTTAAACAAATGACTT
AAATATAATTTGTTCTGTTAGACAAAATGAACACTCTGAGCTAAATGTTT
TGGGGTCCATGTTTCCCAGTGAATTTCCTCAAAGAGCAAGGCTTAGGGGC
AGGGGTAGATTATGTCAAAGAGGCGGCAGGGAGGGTCTCCATCAAGGAAG
CTTCACATTCATTGAGATTCTGGTATAGACTACCTCTGATAACTCTTCTA
AAGA
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGGAAAGGTGGAAAGATTAGAAGAAATTC
TTGTGAAATTACTTGGAGTGCTTGGCTTGGGGGCAGCAAGGTCGAGTGAT
AAGAGTGAGACTAAAAAAAGACCCCCTGCGTCATGTAGAAGCAACATGCC
TAAATCCCTATAATTAGAGGAGAACCCAACAGACTACCCGATTTAGGGAT
GTTATCTGTTTGGCTGACTAGTGCACATGTATGTGGATATATATATATAT
ATATATATATATATATATATATATAAAACAAGTTGAGGAATGGAATGTGA
TTGCTATACTTTTTTTTTTATACCCCCCCGCCCTATTATAACTATCTTCA
TTTATTACCTTCNCCACCCACCCCTCAAAAAAAAAAAAAGAGGAGCATTG
TGACATAATATTTTAGGCACCTTATTGATGTATCAAACTTGGAGCCATGC
AGAGTTTGGATGAAGCCAGGATTGTGCAGCTGTTAATTGTAGATGTTTCT
CTATCAATGGGAGAACCACCCCCAACAAAGCTACACAATTTTACTTGGTA
TACCAGTTGCCTGAGGAGTTGTTAAAAGCACATTCTGATATATAGGTTTG
GTGGGGAGCCAGGATTCTGCAATTCTAACAAGCTTCCAGGTGTCTCTGGA
GCTGCCAATCTGTGGACCACATACTGATTAAGAAGACCTCAGAATATCTA
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no289_a18.g1 MSMg01no289_a18.g1 CHROMAT_FILE:
MSMg01no289_a18.g1 PHD_FILE: MSMg01no289_a18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:17 2005
         (290 letters)



>mm_chr18_43742495_43743184
          Length = 690

 Score =  400 bits (207), Expect = e-116
 Identities = 255/289 (88%), Gaps = 30/289 (10%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggaaaggtggaaagattagaagaaattcttgtgaaattacttggagtgcttggcttggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 415 tggaaaggtggaaagattagaagaaattcttgtgaaattacttggagtgtttggcttggg 356

                                                                       
Query: 61  ggcagcaaggtcgagtgataagagtgagactaaaaaaagaccccctgcgtcatgtagaag 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 355 ggcagcaaggtcgagtgataagagtgagacttaaaaaagaccccctgcgtcatgtagaag 296

                                                                       
Query: 121 caacatgcctaaatccctataattagaggagaacccaacagactacccgatttagggatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 caacatgcctaaatccctataattagaggagaacccaacagactacccgatttagggatg 236

                                                                       
Query: 181 ttatctgtttggctgactagtgcacatgtatgtgga-tatatatatatatatatatatat 239
           ||||||||||||||||||||||  |||||||||||| |                      
Sbjct: 235 ttatctgtttggctgactagtgtgcatgtatgtggagt---------------------- 198

                                                            
Query: 240 atatatatatatataaaacaagttgaggaatggaatgtgattgctatac 288
                |||||||||||  |||||||||||||||||||||||||||||||
Sbjct: 197 -----tatatatataa--caagttgaggaatggaatgtgattgctatac 156


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)