BAC Information

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BAC

Clone NameMSMg01-289H04
Chromosome18 (Build37)
Map Location 65,789,133 - 65,789,422
singlet/doubletsinglet
Overlap geneZfp532
Upstream geneAtp8b1, Nedd4l, Alpk2, LOC667816, Malt1, LOC638570, LOC100042820
Downstream gene5330437I02Rik, Sec11c, Grp, Rax, Cplx4, Lman1, Ccbe1, Pmaip1, LOC100042852
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-289H04.T7 (MSMg01no289_h04.b1)MSMg01-289H04.TJ (MSMg01no289_h04.g1)
ACCAG418996AG418997
length764730
length of high quality
(start - end)
---288 (73 - 360)
definitionCHROMAT_FILE: MSMg01no289_h04.b1 PHD_FILE: MSMg01no289_h04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:45 2005CHROMAT_FILE: MSMg01no289_h04.g1 PHD_FILE: MSMg01no289_h04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAATTTGCGGCGCAAANGANGNNNANTTCGNGACCGNANGGAANNNNGAN
TTGACGNCACNCGNAANNANNAGANNGNNAGANGNAGNANGANGGNNAAT
TTTTCGCCAAAAAAAAAGGNAGGGNNNAANNAAGGAAAGAAAANAAGAAG
AGAAAGAGAAAGGGNNANNNAGGGGAGANNNAGAGNAGGGAAAANNGGAA
NNAGGAAAGGGAGAAGGAAAAGAGAGGAGGAATTTTTTTTTTATATAATA
GATTTATATTAAATAAAAGATAATTTTGAGTTGTAAAGAAAGGNNNNATT
TTTTGGTGATTTTTAGANAGNAGAGGGAGAAAAAGAAAAAAAATTTTTTT
TTTCCCCCCCCCCACTCCCCTGTTGGTTCATATTCCCTTTGGGAAACAAC
GCACCAATAAAAAAAAAAAAAAAATGTTGGGAGGGAGAGGTTTACAGCGC
CATCTCCATTTGACAAATGTAAGTATGTACATGTATACCGAAGGATGGCT
GTAAAAGTGTAAAGTTTTTAGACATTTACAGAACACTCTTGTAAACTGGA
TTGACGGTTTCTTGTAAGCGATTAAGGTTGTGAACCCAATTCCTAACAGG
AGCCATTAAATCTCGACAATTCTGCGCATTTACACAACTGCGAGTAGGAA
AGACAACGTTTTTTTTTTTTTTTTATGCAACACAAAGGACGGCAAGGATG
GTATAACATGACTACTTACAAAACGAATTTTATTCCAAGTATATGGTGGC
GGGGGTTATTCTGA
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACAGAGATGCACCTACCTCTGCCTTCTG
AATGTGAGGGTTAAAAACAGGTGTCACCTGCCAGGCACCCCCAAGGTCTT
TAGATTTGTGTTTCACGTTTGTGCCTGTGATCCATTTTGAACTTTTGTAG
GAGCCCGGCCAGGCTGCTCATTTTTTAGCCAGTGCATGGCCACGTCTTTC
CTTCTGGGAATGGTGTGCACCCTTGTCAGATTGTCACTGGCATATTTGTG
GGGTGTCTACTGGTCTGTGTGTCTGTCCCTCTCTCCACACACCCAGCCTT
GAAGCTCATGTNATGNTTTATCCTCCCCCCCCCACACAGTTCTTCTCAGG
GTTCCTGCCACAGCCCCACCCACTGAACTAAAATAAGAAGAAGGAATACC
TACGAGGAAACCTGCCAGCCCCGCCCGTGATAGAAATTATGTTAAAGCTG
TGCAGTGCTTTCGAGGGAGTGTTGGCATCTGTATGTGCTGAGTCCGAGTC
CCCAGACACAGCCTGGTCCACATACTCAGATCTCTAGGTAGCTTCTGTTT
TCCAGCATGCATGGTCTGGTTCTGTTTTGATAGATTTTCGTTGCTTGATT
GAAAGTTTGTGGTATGGGGGATGAAACCCAAAGCTCACGATTTGCTAGCC
CGAAACCCCCCTCTGAAATTTATTATCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no289_h04.g1 MSMg01no289_h04.g1 CHROMAT_FILE:
MSMg01no289_h04.g1 PHD_FILE: MSMg01no289_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:46 2005
         (288 letters)



>mm_chr18_65788933_65789622
          Length = 690

 Score =  522 bits (270), Expect = e-153
 Identities = 285/290 (98%), Gaps = 2/290 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagagatgcacctacctctgccttctgaatgtgagggttaaaaacaggtgtcacctgcc 60
           |||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 201 acagagatgcacctgcctctgccttctgaatgtgagggttaaaaatacgtgtcacctgcc 260

                                                                       
Query: 61  aggcacccccaaggtctttagatttgtgtttcacgtttgtgcctgtgatccattttgaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggcacccccaaggtctttagatttgtgtttcacgtttgtgcctgtgatccattttgaac 320

                                                                       
Query: 121 tttt-gtaggagcccggccaggctgctcattttttagccagtgcatggccac-gtctttc 178
           |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 tttttgtaggagcccggccaggctgctcattttttagccagtgcatggccactgtctttc 380

                                                                       
Query: 179 cttctgggaatggtgtgcacccttgtcagattgtcactggcatatttgtggggtgtctac 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttctgggaatggtgtgcacccttgtcagattgtcactggcatatttgtggggtgtctac 440

                                                             
Query: 239 tggtctgtgtgtctgtccctctctccacacacccagccttgaagctcatg 288
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggtctgtgtgtctgtccctctctccacacacccagccttgaagctcatg 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 690
Length adjustment: 9
Effective length of query: 279
Effective length of database: 681
Effective search space:   189999
Effective search space used:   189999
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)