BAC Information

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BAC

Clone NameMSMg01-289K22
Chromosome18 (Build37)
Map Location 69,956,871 - 69,957,088
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043380, EG225681, Tcf4
Downstream geneCcdc68, Rab27b, 2310002L13Rik, 4930503L19Rik, Stard6, Poli, Mbd2, EG668032
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-289K22.T7 (MSMg01no289_k22.b1)MSMg01-289K22.TJ (MSMg01no289_k22.g1)
ACCAG419168AG419169
length756826
length of high quality
(start - end)
223 (89 - 311)---
definitionCHROMAT_FILE: MSMg01no289_k22.b1 PHD_FILE: MSMg01no289_k22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:02 2005CHROMAT_FILE: MSMg01no289_k22.g1 PHD_FILE: MSMg01no289_k22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGAATCCGCGGAATTCAA
CAGATGATTGCCTGGTAACTTGCCATCCGTGACTTTCAGTGCCTAAAATG
AATGATGGATGGTCCTAGCCACCCCCTTGTCCCTTTGACTGACATCATAA
TGAGCAGGTATTATAGCTTCATTGTAATGAGTTTGCATCACTAAAATGTT
ATCACTTAACTATTTGGGTTTTGCCAAATTATTTTCCTTACAGGAATCAA
CAATGGGAAGAGATTGAGATTCACTCTTTTTTTTTTTTTTTTCTCTGTCA
AAAAGTCTTGTTAGACTCTTTTTTCAGCTCTCCTGCAAACTTCATTTGGG
CTTTCCCTTTCGGTAGTCCCCCCCCCCCACGCCAGAGTCATAAACGGAAT
ATTTGTTGTTTTCTCGATTAACTAGAAAAAAAAACATACGTGCAGGGAAT
AGGCTAAGTCCAAACATAAGCCCTTCTGGAAGAGAATTAAAAGTTCACAG
GATACTCATATGTTGAGTATGAAACATACAGGGGAGTGGCATACCAGACT
ATGCGATGAGGACAACTCACCTTCTATGACTTAATCAAGGAGGTCTTCAT
ATCCCCCAAGTGTAAGGAATATATGTGGGCTCATGGGTCCTAACCCACAT
GCAGGATGCCTGATGTCTGGCTTGTCCACNCCTTCCATTGCATTACAGAT
AAAGACGCCAGGAAGAACAAACTCTAAGAGCATGAGGCCAGGGCGAGAAG
AAAAAN
GTAAAGGGTGTTTTGTTGTCCTCCCCCTTTTTTANNNNNNNNNTTTTNNN
NNNNNNNNCTACGTAATGGACTAGNTGNNNGNTAGGGNCCCTGGGGCGGC
CCGCCTGGGNCGTTCGNNACATTTAGGGTGGACACTTAATAGNAAAGGAT
TCCGCCGGGAAATTTCCTTGGGNAGNTAGGGNTTGTGGGCCCTTTGGAAA
ACCTTTGGGTTATTTCCAGGGGTCGAAGGCTTTAAAAGAAACCCATTTAA
TAAGGGAAGCGGGGCCCCACTTGGGTGGGAAAAAAAACCCCCCTCTTTTG
TGAGAAAAAAAAGGCGCCCCGGTTTATTTTTCCCCCCCCCCCCTTTTTTT
TCCCCCCCCCGGGGGGGAAAACCTCTCTCCCCCCGGGGGGGGAAAAAAAA
AAAAAAAACCCCCCCCCAAAAGAAAAGGGGGGGGCTTTTTTTTTTTTAAA
AAAAAAAAAGAAAGGCCCTCCTTTGTGGGTGCTCCCCCACCAAGACTTTT
TTTTTTATTGGGGGGGGGGGGGGGGGCCCCCCCCCCACCCACCAAAAAAA
AAAATTTTTTTTTTTTCCCCCCCCCCCCCCCCCCCCTTGGGGGTTTTTTT
TTATTTTAAGAGAGGGGGGAGGGCGGAAAAAAAAAAAAAAGAAGGGGGGG
GGGGGGGGGGGAGGGCGCCTTTTTTTTTTTTTTAACACCCCCCCCCCCCC
TCCCCCCCACAAAAAACNCACCCCCCCCAAAAAAAAAAAGGAGATGTTTG
TTTTTTTTTTTTTTTCGCCCCCCCCCCTCGGGGGGGGGTTTTATAAATAA
AAAAAAGGAAATTTTTTTTTCTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no289_k22.b1 MSMg01no289_k22.b1 CHROMAT_FILE:
MSMg01no289_k22.b1 PHD_FILE: MSMg01no289_k22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:02 2005
         (223 letters)



>mm_chr18_69956671_69957288
          Length = 618

 Score =  385 bits (199), Expect = e-111
 Identities = 215/223 (96%), Gaps = 5/223 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgcctaaaatgaatgatggatggtcctagccacccccttgtccctttgactgacatcat 60
           ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 201 gtgcctaaaatgaatgatggatggtcctaggaacccccttgtccctttgactgacatcat 260

                                                                       
Query: 61  aatgagcaggtattatagcttcattgtaatgagtttgcatcactaaaatgttatcactta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgagcaggtattatagcttcattgtaatgagtttgcatcactaaaatgttatcactta 320

                                                                       
Query: 121 actatttgggttttgccaaattattttccttacaggaatcaacaatgggaagagattgag 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 actatttgggttttgccaaattattttccttagaggaatcaacaatgggaagagattgag 380

                                                      
Query: 181 attcactcttttttttttttttttctctgtcaaaaagtcttgt 223
           |||||||||||||||||||     |||||||||||||||||||
Sbjct: 381 attcactcttttttttttt-----ctctgtcaaaaagtcttgt 418


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 223
Length of database: 618
Length adjustment: 9
Effective length of query: 214
Effective length of database: 609
Effective search space:   130326
Effective search space used:   130326
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)