BAC Information

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BAC

Clone NameMSMg01-289O19
Chromosome18 (Build37)
Map Location 51,015,805 - 51,016,023
singlet/doubletsinglet
Overlap genenone
Upstream geneDmxl1, Tnfaip8, Hsd17b4, LOC626721, LOC667233, Gm93, Hdhd1a, LOC100042373
Downstream geneLOC100042385, Prr16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-289O19.T7 (MSMg01no289_o19.b1)MSMg01-289O19.TJ (MSMg01no289_o19.g1)
ACCAG419344AG419345
length749742
length of high quality
(start - end)
708 (42 - 749)225 (425 - 649)
definitionCHROMAT_FILE: MSMg01no289_o19.b1 PHD_FILE: MSMg01no289_o19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:20 2005CHROMAT_FILE: MSMg01no289_o19.g1 PHD_FILE: MSMg01no289_o19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAAGGCTCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTAGC
CAACATCAAAGTAAATGGTGAGAAGCTGGAAGCAATCCCACTAAAATCAG
GGACTAGACCAGGCTGCCCACTTTCTCCCTACCTCTTCAACATAGTACTT
GAAGTCCTAGCCAGAGCAATTAGACAACCAAAGGAGATCAAGGGGATACA
AATTGGAAAGGAAGAAGTCAAAATATCCGTTTTTGGAGATGATATGATAG
TATATATAAGTGACCCTAAAAAATTCCACCAGAGAACTCCTAAACCTGAT
AAACAGCTTCCGTGAAGTAGCTGGATATAAAATTAACTCAAACAAGGCAA
TGGCCTTTCTACCCCCAAGGGTAAACAGGCTGAGAAAGAAATTAGGGAAA
CACCACCCTTCATGATAGTCACACATAATATAAAATACCTTGGCATGACT
CTAACTAAGGAAGTAAAAGATCTGTATGATAAGAACTTCAAAAATCTGAA
GAAAGAAATTAAAGAAGATATCAGAAGATGGAAAAATCTCCCATGCTTAT
GGATTGTGAGGATCAATATAGTAAAAATGGCTATCTTGCCAAATGCAATC
TACAGATTCAGTGCAATCCCCATCAAAATTCCAACTCAATTCTTCAATGA
ATTAGAAAGGGCAATCGGCAGATTCATCTGGGATAACAAAAAACCTAGG
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTTCGAAAAAATCTTTATTGAGCTTTTGTAGTGTGCTGGCAGA
GTAGCTCTCAACTTTCCTCCACAGAGACCCTTTAATACAGTTCTTCGTGT
TATAGTGACCCCCAACCATACAATCATTTTCTTTGCTACTTCATAACTCT
AATTTTGCCACTATTTCAAAAATGTAATGTAGCTAGCTGTGTTTTCCATT
GTTCTCAGGCAGTCCCTGTGAAAGGGTCTGCTCATCTCCAAAACGGTAAC
GACCCACAGGTTTATAACTACNGCACTAGATATTCAGATACAAGGTAGAG
AGAGAAATCGTGTTTACCATGTGGTATTATCATTAAAGGAAGTAAATCTC
ACTGGAAATCACCCCAGTCCAGAGAAAAAGTTATACTATTACTTAATGTG
TATATTCATGCATAGGGCTATAGGTTCACAAAGGACATTGAGGAAAAATG
ATGAAATTGATGTCTTAAATAACAAACCATGGTATTATCTTCAGAAGAGG
GCATTTAGTATGCACACGGAGTGGTCACCCAATTCCCCAAATTAGTGTGC
TGAGCAGGAATAATTTATGATGCTCGCTAGGGAAGTCTGTGGACCATGAA
GGAAAATTATTTTTGAGATGAATGCTTTCGTTGTACCAGGCATCCATCAA
GGGGTGGGGGTTGAGTAAGCCCAGGTATGGAAGATAGAAACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no289_o19.g1 MSMg01no289_o19.g1 CHROMAT_FILE:
MSMg01no289_o19.g1 PHD_FILE: MSMg01no289_o19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:20 2005
         (225 letters)



>mm_chr18_51015599_51016223
          Length = 625

 Score =  400 bits (207), Expect = e-116
 Identities = 216/219 (98%)
 Strand = Plus / Minus

                                                                       
Query: 7   ttatactattacttaatgtgtatattcatgcatagggctataggttcacaaaggacattg 66
           |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct: 425 ttatactattacttaatgtgtataatcatgcatagggctataggttcgcaaaggacattg 366

                                                                       
Query: 67  aggaaaaatgatgaaattgatgtcttaaataacaaaccatggtattatcttcagaagagg 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 aggaaaaatgatgaaattgatgtcttaaataacaaaccatggtattatcttcagaagagg 306

                                                                       
Query: 127 gcatttagtatgcacacggagtggtcacccaattccccaaattagtgtgctgagcaggaa 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gcatttagtatgcacacggagtggtcacccaattccccaaattagtgtgctgagcaggaa 246

                                                  
Query: 187 taatttatgatgctcgctagggaagtctgtggaccatga 225
           |||||||||||||| ||||||||||||||||||||||||
Sbjct: 245 taatttatgatgctagctagggaagtctgtggaccatga 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 225
Length of database: 625
Length adjustment: 9
Effective length of query: 216
Effective length of database: 616
Effective search space:   133056
Effective search space used:   133056
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)