TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCATCACCAGACGAAACCCTACCTAAATCAAAACTGTGAAGTTGG
AGCATGTCCTAGTTAGGGTCACTATTGCTATAGTGAGATAGAACATGCTA
CCTACCATGATCAAAAGCGAGTCGGGAAGGAAAGGGTTAGATATCCTCAG
GCACAGTCCTTTGAGGGAAGCCAAAGTAGAGCTTCAAACCAGTCAGGAAT
GGTGGAGGGGCGTTGCCTACTTGCTCAGCCGGCTGTCTTATAGGACCTAG
AACCGTCAGCCCAAAGAGGGCACCACCCACATGGACTGAGCCTCCCTCCA
TCAATCACTAAGAAAATGTTCTCCAGGCTTACATACGGCTGGATCTCACA
GAGGTATTTTCTCCATTGAGGTCCCCTTCTCTCAGATAACTATTGTGTTA
GAATCACCACGGCTTGCAACCAGACAGATCACACCAAGCCAATACCAAGC
CAATACAGTTCCACTCCACGTGGGGGAAGAGGGCAAAGGTAGCCACAAAG
ATGAAGGAGAAGGGGGTGGGGGGGGGGAGAGANNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNGNNGNNNNNNNNGNGGGNTNGNNGGGGNGGNN
GGTGTTTTTGTTTTTTTTGGTTTTTTTTTTGGTGTTTCTGTNTTTTTTTG
TTGTTTTTGGTNGTTTTCTTTGNTTTTTTTTGTTTTGTTTTTTTT

GAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAAGTCACCCTGCTACATGAGGCCCT
ATCTCAACACCACAACGAAAGCAAGTGACCCCGAACAAACAATTATAATT
ATGGTCTTAAAAGAACATGTCTGAGCTGACGAGACGGCTTGGCAGGTAAA
GGGGCTGCAAAAGCCTAATGGCCTGAGTTCAACTCACNAAAGNNCTGGNA
AAGGCAAAATGCACAGTACACATGAAAAGTAAGTAGGTAAGACACAATAG
GCCATTTTTTAAATATGGAAATCTTATTTAAATGGCATTGTAAAAGTGCT
ATTGCATTAAAAGACTGGTACCATGGTTTATGCCTCCTCCCCCCCCTCAC
CGAGGTAAGGCGAGACTGGTCTATGTGGATTTCCCCGGCCCACCCCGGGG
TCTAAAAAAACCCCCGTGGAAAATTACGGGGAAAAAAGTTTCCTCCCCAA
AAAATTTTTAAAAAAAAAAAAAAAAATTTTTTTTTTTTTTTTAAAAAAAA
TCCCACGGGGGGAGGAAAGGGACCTTTTTTTTGTGGGGGGGGGGAGTTTT
TTTTCCGCGAGGAGGGGGGTAAAAAACACCCCCGGGGGGGGGGGGGGGGA
TTAAAATTATTTTTCGGGCAGGAAGAGGNCCCGCCACCAATTTATTCCTC
TCAATAAAATAAAGGGGGGGCGCCCCACCAAAAACAATATTTTTG

Query= MSMg01no290_j04.b1 MSMg01no290_j04.b1 CHROMAT_FILE:
MSMg01no290_j04.b1 PHD_FILE: MSMg01no290_j04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:10 2005
         (538 letters)



>mm_chr18_77965695_77966632
          Length = 938

 Score =  957 bits (495), Expect = 0.0
 Identities = 518/527 (98%), Gaps = 4/527 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcatcaccagacgaaaccctacctaaatcaaaactgtgaagttggagcatgtcc 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 gaattctcatcaccagaggaaaccctacctaaatcaaaactgtgaagttggagcatgtcc 268

                                                                       
Query: 65  tagttagggtcactattgctatagtgagatagaacatgctacctaccatgatcaaaagcg 124
           |||||||||||||||||||||||||||||||||||||||  |  ||||||||||||||||
Sbjct: 269 tagttagggtcactattgctatagtgagatagaacatgc--c--accatgatcaaaagcg 324

                                                                       
Query: 125 agtcgggaaggaaagggttagatatcctcaggcacagtcctttgagggaagccaaagtag 184
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 325 agtcgggaaggaaagggttagatatcctcagtcacagtcctttgagggaagccaaagtag 384

                                                                       
Query: 185 agcttcaaaccagtcaggaatggtggaggggcgttgcctacttgctcagccggctgtctt 244
           ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 385 agcttcaaaccagtcaggaatggtggaggggcactgcctacttgctcagccggctgtctt 444

                                                                       
Query: 245 ataggacctagaaccgtcagcccaaagagggcaccacccacatggactgagcctccctcc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ataggacctagaaccgtcagcccaaagagggcaccacccacatggactgagcctccctcc 504

                                                                       
Query: 305 atcaatcactaagaaaatgttctccaggcttacatacggctggatctcacagaggtattt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atcaatcactaagaaaatgttctccaggcttacatacggctggatctcacagaggtattt 564

                                                                       
Query: 365 tctccattgaggtccccttctctcagataactattgtgttagaatcaccacggcttgcaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tctccattgaggtccccttctctcagataactattgtgttagaatcaccacggcttgcaa 624

                                                                       
Query: 425 ccagacagatcacaccaagccaataccaagccaatacagttccactccacgtgggggaag 484
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccagacagatcacaccaagctaataccaagccaatacagttccactccacgtgggggaag 684

                                                          
Query: 485 agggcaaaggtagccacaaagatgaaggagaagggggtggggggggg 531
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agggcaaaggtagccacaaagatgaaggagaagggggtggggggggg 731


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space:   489984
Effective search space used:   489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)