BAC Information

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BAC

Clone NameMSMg01-292E10
Chromosome18 (Build37)
Map Location 8,999,554 - 8,999,722
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC225134, LOC665132, EG433158, EG545242, LOC665161
Downstream geneFzd8, 9430022F06Rik, Ccny, LOC665176, LOC665184, EG639618, LOC100039755, Cetn1, LOC225155, Colec12, LOC665111, LOC100039787, EG433161, Thoc1, Usp14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292E10.T7 (MSMg01no292_e10.b1)MSMg01-292E10.TJ (MSMg01no292_e10.g1)
ACCAG421040AG421041
length779741
length of high quality
(start - end)
---169 (383 - 551)
definitionCHROMAT_FILE: MSMg01no292_e10.b1 PHD_FILE: MSMg01no292_e10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:17 2005CHROMAT_FILE: MSMg01no292_e10.g1 PHD_FILE: MSMg01no292_e10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCN
GGAATTCTTTNGTTTATCTCCTGAACCCCGTTTTTTAATGGATCGTATTT
AGATTTGTCGGAAGACCACCTATCTTGAGCCTCATTATGATATGTTGGAT
ATAAGTACCCCTCATCTGATTTAGAGATCAGGAAAAGTAGCCTATTCCCA
ATACAGTTGGATGGACTATTTTAACTTATTTGAAAGAGCTCTTTTGTCTG
AGCATGCATGTATGGGAGTTGTATGAGGATCACATTTAGTAAATTCTCTG
ATCTTACCACACAGGCCATATGCTGTTCTGTGCAGGAACCTTTCCCTTGT
GTCTATATCTTCGAGACTTTTCCCCACGTTTCTCCTCTAATAATTTCACC
CCCCCCCCCCCCTATCTTAGCTTCCTGGATCCTGTAAGATTGGACCCCAC
CATAAACAAACAAATAATGGCCGACTTGCACCCTTCTAATTGATTAACTA
CAACTCAGCCCGAATCCCTCGATGTATACGCTGGATTTTTTCCACTGTAT
GTTGATAACTCCCTTGTCTGATATCTTGGTAACATACTCGAGTGTTCCCA
ACTCTGAATGTGCATATTTATTTAATGAGGACCGCTTGTCTGCCTTGCTC
CTCTTTTTGTTTGCTTTTTATCTCCCCTGTTCTATACATTATGTTTCACG
AACTTTTATGATTGATGCTCCTGTAAACAACACCCATCTCTTGGAGATCT
ATAACCGCTCCTTCAGTTAATGATTTGTA
CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGAAACAGACTGTGCGACTGACTGTACT
GCGATATAGCCAGCGCGAGAGAGACAATTAGTGTGTTGACTTCTCTACCC
CACTGATGAGGAGAATTAAGACTTTTCATAAGCGAACCCTATCATCCAAG
CCGAGAATGAGAACAAACAATCTAGAACCAAAAGAACCCTGAACCTAATG
TTGGGCTAAACATCATCTAGACTCCTCCCCTTTTTCATCGCCTCCATCAC
CTCCTAGCCCTCCAGTACTAGCTGCTTTTCTGGTCAGTTCAGGAGAAGAA
GCTTGTTGTATTGTAGATTCACATGCCCCTGTCTATATTTGCAGAGTTTG
GGTACACTCATATAACCCCCCCAAATGAATATATACTTGGCCCTCTGCTG
GAGTGCTAAAGGTGTAAAATGTACATCTCCTTTCTGTCACTGCTCCTGTG
TTGCTCTCCTTATTTGTGACCCAGGACTCTTCCAGGTGCAGCTGGCTTCA
GATGAGTGGGATTTCAGTAGCACTAAACTTTGTTTCAGGGAGCAAGAGCT
TCATTCCACTGATGGTTTGTGATCTCCCAGGCGACTTAATCTTTTCCGAC
TTGTGTAAATGAAAACCCCTGTAGCATTTTAGTTATACAATCCCATCCAT
GGTCATTGTTAGTATTCCTGGGATGGTCACTCCTTTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_e10.g1 MSMg01no292_e10.g1 CHROMAT_FILE:
MSMg01no292_e10.g1 PHD_FILE: MSMg01no292_e10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:18 2005
         (169 letters)



>mm_chr18_8999354_8999922
          Length = 569

 Score =  282 bits (146), Expect = 6e-81
 Identities = 163/174 (93%), Gaps = 10/174 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctatatttgcagagtttgggtacactcatataa-----cccccccaaatgaatatatact 55
           |||||||||||||||||||||||||||||||||          | |||||||||||||||
Sbjct: 369 ctatatttgcagagtttgggtacactcatataaagtat-----ctaaatgaatatatact 315

                                                                       
Query: 56  tggccctctgctggagtgctaaaggtgtaaaatgtacatctcctttctgtcactgctcct 115
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tggccctctgctggagtgctaaaggtgtaaaatgtacatctcctttctgtcactgctcct 255

                                                                 
Query: 116 gtgttgctctccttatttgtgacccaggactcttccaggtgcagctggcttcag 169
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gtgttgctctccttatttgtgacccaggactcttccaggtgcagctggcttcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 569
Length adjustment: 8
Effective length of query: 161
Effective length of database: 561
Effective search space:    90321
Effective search space used:    90321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)