BAC Information

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BAC

Clone NameMSMg01-292E13
Chromosome18 (Build37)
Map Location 40,467,673 - 40,467,919
singlet/doubletsinglet
Overlap geneKctd16
Upstream geneArhgap26, Nr3c1, Pabpc2, LOC100041939, Yipf5
Downstream geneEG225416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292E13.T7 (MSMg01no292_e13.b1)MSMg01-292E13.TJ (MSMg01no292_e13.g1)
ACCAG421045AG421046
length790776
length of high quality
(start - end)		299 (70 - 368)270 (74 - 343)
definitionCHROMAT_FILE: MSMg01no292_e13.b1 PHD_FILE: MSMg01no292_e13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:18 2005CHROMAT_FILE: MSMg01no292_e13.g1 PHD_FILE: MSMg01no292_e13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:18 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTTAGGATCATCGTCCTTGTTGTATACTTATCCTGCTCCCATTA
ATTGGGGTACTCTACTGTGGCAAGGCTACTTGCCATGTCTTAACTTGAAA
ACCAGAAAGTCAGTTGTGCATGTACAAGTCTCTTTCTTCCAAGTAAGATG
TCAGTTCCCAGGGAGGCCTCGAGAACTTATACTTTACTCACTCACACCCT
ACTCAAAATAGAAGTCTGGTTCGAAGTAGTCTCTGCACTGAATCGGTGGT
GCGGGTGTCTCTCTTTTGTTGGGGTGCGGGGGTCCGTCCCCAGGGCAGCT
TCTAAGAGCAAATGTCTTATAAGTGCATCCATGCCCCTTGTGCAGGAAAT
GCTGCTGGGTGGTCAGCCCCCCCCCGGGCCAAATGCAGATAACTATAGAA
CAGAGGAAGCTTCTATTCTGATTGGTTTCCGAGGACACATCCAACAAGAA
TATGCAGTCCATTCTGGCCATAATGGCAGACACCTGCTATGAGAAAGCGT
CCTTTATAATATTAAATTAACCCACATAATGTTATTTCTAGACCTGTTAA
GAGGCTTCCTCAGTATTTATCTTTCTTCCGATTCAGACTTTATCAGTTCA
AGCTAACGTCGTTACATATTGTTGTTATATATCCAATAATTCTCTATCAC
TCGTTCTTTTTATTCTACCCTTAATATTTGATCTATACACCCGGGATTAA
CAACCTCCACACATTTTATTTACTTTCTTGTTTCTCTCTG

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTGAACTCACTGTCCTTTCAGGTCCA
CATTTGCTCTGGCTCTGGCAACTGACTGAACCAAACAATTAGGCTCATAC
CTAGAACTTTGGAAATGGTAATGGAGTTGATAACACACCCTAACAGAAAG
AGGAAGGCTCCACTCACTAGTACACTTTCACTAGAAGCCTCGCCCTGTCA
GCAGTTTAGGAATTTGTAAAGCCAATCTGGACAATATTTAAATGGTTTGG
AATTTCTACTTCATGTTTAATTTTTTTTTTTTTTTTTTTTTTNNNNNNNG
ANANNNATTTTTTTTTTTTCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNN
NNNNNNNNTTGTTTCCCCCCCCCAAAAAAAAAAAAAAAAAGGGTGGGGGG
GGGGGTGGGTTATTTGTCGCGCACCATCATTTTTGGGCCCACGCTTAATG
TTTTATATGTTTTTATCATACCTTTATACCCCCCTCCCTATTTCTCTAAC
CTTTTTTTGTTTTTTCTTAAACTCCCTTATCTTTTCATCGTGCTTTCACC
TTTTTCCCCCCTTTTTTTCTTTTCCCCCGGTAACCCGTTTACCAAGTTGA
GTTGTTTGTATTTTTTTTTTTTTTCCTTCGTCTCCATGTTTGTTCCACCA
CTGCTCATCCATCTATTTCTTTTCTTTCGGACTCTTTACCAGCTTTTTTT
TCCCTAACTTTTTTCTTTTCTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_e13.g1 MSMg01no292_e13.g1 CHROMAT_FILE:
MSMg01no292_e13.g1 PHD_FILE: MSMg01no292_e13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:18 2005
         (270 letters)



>mm_chr18_40467474_40468142
          Length = 669

 Score =  387 bits (200), Expect = e-112
 Identities = 236/248 (95%), Gaps = 1/248 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgaactcactgtcctttcaggtccacatttgctctggctctggcaactgactgaacca 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 446 tctgaactcactgtcctttcaggtccacctttgctctggctctggcaactgactgaacca 387

                                                                       
Query: 61  aacaattaggctcatacctagaactttggaaatggtaatggagttgataacacaccctaa 120
           ||||| |||||||||||||||| ||| | |||||||||||||||||| ||||||| ||||
Sbjct: 386 aacaa-taggctcatacctagatcttcgaaaatggtaatggagttgaaaacacactctaa 328

                                                                       
Query: 121 cagaaagaggaaggctccactcactagtacactttcactagaagcctcgccctgtcagca 180
           ||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||
Sbjct: 327 cagaaagaggaaggctccactcactagaagactttcactagaagcctcgccctgccagca 268

                                                                       
Query: 181 gtttaggaatttgtaaagccaatctggacaatatttaaatggtttggaatttctacttca 240
           ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 267 gtttaggaatttgtaaagccaatctggacaatatttacatgatttggaatttctacttca 208

                   
Query: 241 tgtttaat 248
           ||||||||
Sbjct: 207 tgtttaat 200


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 669
Length adjustment: 9
Effective length of query: 261
Effective length of database: 660
Effective search space:   172260
Effective search space used:   172260
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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