BAC Information

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BAC

Clone NameMSMg01-292M08
Chromosome18 (Build37)
Map Location 32,657,015 - 32,657,307
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383420, Slc25a46, Sap130, LOC640549, Ammecr1l, Polr2d, EG626327, Wdr33, Sft2d3, Lims2, Gpr17, Myo7b, Iws1, Proc, LOC546710, Map3k2, Ercc3, Bin1
Downstream geneGypc, LOC100041160, LOC100041170, Tslp, Wdr36, Camk4, Stard4, EG433170, D0H4S114, ENSMUSG00000073610
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292M08.T7 (MSMg01no292_m08.b1)MSMg01-292M08.TJ (MSMg01no292_m08.g1)
ACCAG421402AG421403
length777752
length of high quality
(start - end)
229 (45 - 273)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no292_m08.b1 PHD_FILE: MSMg01no292_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:56 2005CHROMAT_FILE: MSMg01no292_m08.g1 PHD_FILE: MSMg01no292_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAAGAGTATCCCCCTGCCTCTGCCTCCCGAGTGCTGGAATTAAAGG
CATGAACTACCACTACCTGGCCCTCACCTGTACTTTTAGAATATGGATTC
TAGCAGTATGCAACTCAAGTCCTTGTCCTTACAAATCAAGTCCTTTACTA
ATCTAACTATTTTTAGAACTCTATGATGGGGGCGGGGGAGATGGAGAGGA
TTGCATGAGTGACATGATGTACATATGTAACTCAGAGGAGAGTTTGGGGA
AGTCAGGGATCTCCTTTTTTTTTTTTAGGCCTGGAGACCCAACCCACGCC
AGAACCTTTTAAGTAACTCCCCCAGACGAACCCCCATTAGGATTTTTTTT
GTTTTAGTATTTGCCCCCCCTCAAAAAAAAAAAAAAAAATGTGTGGGTGG
GGGCCTTTCTTTCCATATGAAATTATTTATACCCTTAAACCATTGTTTAC
CTTTTTCCCATTTTCCCCCTTTTCTTGTTTTTCGCGGGCCTTTTGAATCA
TTTTTTCATATACCCACATTGTTATATTCCCCTCATTAATTCACGCCATA
TTTTGTATTCATATCTCCACTTTTATCCTCCTTCCCTTTTTTCTTTTTCT
CTTTTTTCCCCCCCCCTTTTCTCCACCTTTTTTTTTTTCCTCCCCCTTTA
TCCTATATTCTCCCATTTACTATATACTACATATATTTATCCCTTATTCC
CCTCTTTATACTTCATTCTATTTTTTG
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATGTTCAGCCAGTTATCATTGCTC
ACAGTCACCCATGCAGACACAGGGCTTGAGGACCATAGTAATGACAGTCT
GATACAGAGAAACTGAAATGCTTGAGCTTTGAGCTCTTGCCCTATTCCAC
ATGGCCTGCCCTGTGCAGTTTATTTACTCTGTCCCTGGAAGGCTGCTTGA
ATGGTATAATAATTTATTGCCATTTAAATTTATGGGCTGCAAGACAAATA
AGATCTCCCTTCCTGTCCTCAAGCCCATGAGACAGTTGAAGGATTTTTTT
CTGCAAATGTGGGATTGCTTTGTAACCAACTCAGTTGTGGGTGGCTGTTT
TTGCTTCATTCAAGAGCACCCCATTATGATGCAGTAGCTACACTTTAAAG
CCCTTATTCAAATTTCAGAGGCACTTTTCTGTCTTGCTCCATAAATTTGA
TATTTTAGCGGCATTTTAAAGATTATTTTGCAGGCATTGACCAGAAGAGA
AGAATTACCTGAATACTGTACTGCTGTGTTTTTTTCCTCCTCCCCCCCTC
CCTTCTTCTTTTTTCTTGCTCTTTTTTTCTCCCCAATCTTTTTCATTCAT
ACCAAATCTACAACCACATTTCTTTCTTTTCTTCTCTCTTTCCCCACTCC
CTTGCCCTTCTCCATTTTTTTTTTTTTCTTTGTCACTCCACCCCTCTTTT
AG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_m08.g1 MSMg01no292_m08.g1 CHROMAT_FILE:
MSMg01no292_m08.g1 PHD_FILE: MSMg01no292_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:56 2005
         (292 letters)



>mm_chr18_32656815_32657507
          Length = 693

 Score =  482 bits (249), Expect = e-140
 Identities = 282/293 (96%), Gaps = 1/293 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgttcagccagttatcattgctcacagtcacccatgcagacacagggcttgaggaccat 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 493 atgttcagccagttatcattactcacagtcacccatgcagacacagggcttgaggaccat 434

                                                                       
Query: 61  agtaatgacagtctgatacagagaaactgaaatgcttgagctttgagctcttgccctatt 120
           | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 433 actaatgacagtctgatacagagaaactgaaatgcttgagctttgagatcttgccctatt 374

                                                                       
Query: 121 ccacatggcctgccctgtgcagtttatttactctgtccctggaaggctgcttgaatggta 180
           |||||||||||||||||||||||| ||||| | ||| ||||||||||||| |||||||||
Sbjct: 373 ccacatggcctgccctgtgcagttgatttattttgtacctggaaggctgcctgaatggta 314

                                                                       
Query: 181 taataatttattgccatttaaatttatgggctgcaagacaaataagatctcccttcctgt 240
           |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 313 taataatttattgccacttaaatttatgggctgcaagacacataagatctcccttcctgt 254

                                                                
Query: 241 cctcaagcccatgagacagttgaagga-tttttttctgcaaatgtgggattgc 292
           ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 253 cctcaagcccatgagacagttgaaggattttttttctgcaaatgtgggattgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 693
Length adjustment: 9
Effective length of query: 283
Effective length of database: 684
Effective search space:   193572
Effective search space used:   193572
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)