BAC Information

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BAC

Clone NameMSMg01-292N18
Chromosome18 (Build37)
Map Location 16,291,186 - 16,291,468
singlet/doubletsinglet
Overlap geneLOC100040202
Upstream geneKctd1, LOC100040151, Aqp4, LOC665473, Chst9, LOC670012, LOC100040551, EG225228
Downstream genePpia-ps18_172.1, EG665509, Cdh2, LOC665519, 1700001G01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292N18.T7 (MSMg01no292_n18.b1)MSMg01-292N18.TJ (MSMg01no292_n18.g1)
ACCAG421465AG421466
length800766
length of high quality
(start - end)
96 (45 - 140)285 (77 - 361)
definitionCHROMAT_FILE: MSMg01no292_n18.b1 PHD_FILE: MSMg01no292_n18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:03 2005CHROMAT_FILE: MSMg01no292_n18.g1 PHD_FILE: MSMg01no292_n18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACCTTTTCCTTTACTTTCTGTTTTATTCAAAATGTTCAGAGATTAG
AGTGTGTGTGCTTTTGCGCGCGTGTGTGTGTGTGTGTGTATGTGAGCATA
CGTAAAAGTATATCACAAAACATACACATTATTGCCCCTACCAAACCCAA
CCCCAAACCCACCCACAAACACACCCAAAAATACACTCCATAACACTCCC
ACACCCACAAACTAACCAAACAAAAAAACACCAACACAACCCCACACCAC
ACACCCACACCCCTTCTTTTCTACCACAACCCAAAACCCCCACCCCCCCA
CCCACAATTTTTTTCTCCCCCCCCCCCCCCCCCCAAAAAAACCAAAAACA
CCCACAACAATAAATTTCTNCCCANCACCAAAAAAAAAAAAATTTANCCC
ACAATCCCCCCCAACCATCAACACCACACACACTACACACCCCACCACCA
CAAAAACTCACAATCATCCCACCACACAACCACCCCACAACAACCCCCCC
CAACCACCTACCTCCCCCCCCCCCCACTACCCCCACCACACCAACCCATA
CACCACCCCACCACACACTCAACCAAAACAAACCCACCCCCCAAACTAAA
AACAAACCAAAACACACCCCACCCACCCACCCACCAAACCCCCAAAAAAC
CTCCAACACCACCCCCCATCCCACCCTCCACCACCTCACCACCCCCCACA
AAAAACACCCAACCCTATCCACCCCCCCCCCCACCCCCCCCCCTCACACC

TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGGTTTCTGGAAAAGAACTATCT
GAAAGAGAGAGTAATTGTCCTTTTGTATACTTATCCTTGACTAGGTAATG
ATATGCAGAGAGGGAGAGAGGAAGGAAAGAAGTCAAGGAGATAAAGGTAA
GATTCGTAAAGTAGGTGGTATTGAATAATTATATAACATGAAAGTTTTAG
GTAGGCTTGCCTTGGAATTTATTAAATTATCATTGTCTCATCACTCTCTA
ACCTTTAATGTACTGGAGTCAGGCATATAGGGCAAAGGTCATATTTATTT
ATATTCACCTTGACTCATAACTGCCTTGAGTGGATTTTTTTCCTCTTGGA
GTCTTTCCTTATCCCCCCCATTTCTCAGAATGTCATGTATAGAGGATTCA
GTCCTCTATCTGTCTCCATACAGAGACAGGAACTATCTTTCATCTTGTTA
TATATACATGGACCTGCCTTATAACTTTACTGTAAACTATATGCAATATT
TTCTTTCTCCTTTTTCTCTTTTACTCTTATGACCCTGTCTTGTTTGCCGC
AGTCTTGCACGTTATTCCCTTCCTCCTTTCTTCCTCCTCATTCGCTCCCG
GTATCCCTTTTTCACGTCTCGAGCGCCTATTTTTTCTCTTCCCTTGGCGT
CTGCCGTTATCTGCCCCTCGGTCTCCCTCCCCCTTCTCCCCTTCACTTTC
CTCTATCCCTGCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_n18.g1 MSMg01no292_n18.g1 CHROMAT_FILE:
MSMg01no292_n18.g1 PHD_FILE: MSMg01no292_n18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:03 2005
         (285 letters)



>mm_chr18_16290986_16291670
          Length = 685

 Score =  524 bits (271), Expect = e-153
 Identities = 280/283 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctggtttctggaaaagaactatctgaaagagagagtaattgtccttttgtatacttatcc 60
           |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctggtttctggaaaggaactatttgaaagagagagtaattgtccttttgtatacttatcc 260

                                                                       
Query: 61  ttgactaggtaatgatatgcagagagggagagaggaaggaaagaagtcaaggagataaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgactaggtaatgatatgcagagagggagagaggaaggaaagaagtcaaggagataaag 320

                                                                       
Query: 121 gtaagattcgtaaagtaggtggtattgaataattatataacatgaaagttttaggtaggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaagattcgtaaagtaggtggtattgaataattatataacatgaaagttttaggtaggc 380

                                                                       
Query: 181 ttgccttggaatttattaaattatcattgtctcatcactctctaacctttaatgtactgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgccttggaatttattaaattatcattgtctcatcactctctaacctttaatgtactgg 440

                                                      
Query: 241 agtcaggcatatagggcaaaggtcatatttatttatattcacc 283
           |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 441 agtcaggcatatagggaaaaggtcatatttatttatattcacc 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)