BAC Information

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BAC

Clone NameMSMg01-293C01
Chromosome18 (Build37)
Map Location 40,467,676 - 40,467,919
singlet/doubletsinglet
Overlap geneKctd16
Upstream geneArhgap26, Nr3c1, Pabpc2, LOC100041939, Yipf5
Downstream geneEG225416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-293C01.T7 (MSMg01no293_c01.b1)MSMg01-293C01.TJ (MSMg01no293_c01.g1)
ACCAG421658AG421659
length716719
length of high quality
(start - end)
502 (43 - 544)294 (72 - 365)
definitionCHROMAT_FILE: MSMg01no293_c01.b1 PHD_FILE: MSMg01no293_c01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:26 2005CHROMAT_FILE: MSMg01no293_c01.g1 PHD_FILE: MSMg01no293_c01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:26 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGAC
GTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTT
TTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGATCGTGAGGCC
CCGCTTTCACGGTCTGTATTCGTACTGAAAATCAAGATCAAGCGAGCTTT
TGCCCTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGG
ACACCTGCGTTACCGTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCAC
CTGGCACTGTCCTCGGAGCGGGTCGCGCCCGCCCGCACGCGCGGGACGGA
CGCTTGGCGCCAGAAGCGAGAGCCCCTCGGGGCTCGCCCCCCCCGCCTCA
CCGGGTCAGTGAAAAAACGATGAGAGTAGTGGTCTTTCACCGGCGGCCCG
CGAGGCCGGCGTGCCCCGACCCCGACGCGAGGACGGGGCCGGGCGTCGGG
GGCCTCCCACTTATTCTACACCTCTCATGTCTCTTCACCGTGCCAGACTA
GAGTCAAGCTCAACAGGGTCTTCTTTCTCCGCTGATTCCGCCAAGCCCGT
TCCCTTGGCTGTGGTTTCGCTGGATAGAAGGAAGGACAGTGGGAATCTCG
TTCATCCATCATGCGC
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTGAACTCACTGTCCTTTCAGGTCCACA
TTTGCTCTGGCTCTGGCAACTGACTGAACCAAACAATTAGGCTCATACCT
AGAACTTTGGAAATGGTAATGGAGTTGATAACACACCCTAACAGAAAGAG
GAATGCTCCACTCACTAGTACACTTTCACTAGAAGCCTCACCCTGTCAGC
AGTTTAGGAATTTGTAAAGCCAATCTGGACAATATTTAAATGGTTTGGAA
TTTCTACTTCATGTTTTTTTTTTTTTTTTTTAGAGACAGGGTTTCTCTGT
ATAGCCCTGGTTGTCCTGGCACATTGGATTTTATAACAGACTTTGTGTGT
GTGTGTGTGTGTGTGCGCGTGTGTAATACTTCTCCTGTGATTGCCGTAAC
TTGCAATCTAGTGGGCTTATGTTTGATTCCTGTAATCTTTTTTTCTAATT
CTTTTTCCTTTTTATATTTTATTTTATTTTATTTTATTTTATTTTATTTT
ATTTTATCTTATTTCATTCTATTTCACTTTATTTCGCGTTTTGAGACAGG
GTTTCTTCTGTTCCCCCCGCGCTGTCCCTGAAATCAGTTTTGTTACCACG
TTTGCTCCTAAATTTCTTATTCCCTCCCCTTCTCTGCCCCCCCGAGTGCT
GTAACTTATGGTTGCGCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no293_c01.g1 MSMg01no293_c01.g1 CHROMAT_FILE:
MSMg01no293_c01.g1 PHD_FILE: MSMg01no293_c01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:26 2005
         (294 letters)



>mm_chr18_40467476_40468168
          Length = 693

 Score =  366 bits (189), Expect = e-105
 Identities = 231/245 (94%), Gaps = 1/245 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgaactcactgtcctttcaggtccacatttgctctggctctggcaactgactgaacca 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 444 tctgaactcactgtcctttcaggtccacctttgctctggctctggcaactgactgaacca 385

                                                                       
Query: 61  aacaattaggctcatacctagaactttggaaatggtaatggagttgataacacaccctaa 120
           ||||| |||||||||||||||| ||| | |||||||||||||||||| ||||||| ||||
Sbjct: 384 aacaa-taggctcatacctagatcttcgaaaatggtaatggagttgaaaacacactctaa 326

                                                                       
Query: 121 cagaaagaggaatgctccactcactagtacactttcactagaagcctcaccctgtcagca 180
           |||||||||||| |||||||||||||| | |||||||||||||||||| ||||| |||||
Sbjct: 325 cagaaagaggaaggctccactcactagaagactttcactagaagcctcgccctgccagca 266

                                                                       
Query: 181 gtttaggaatttgtaaagccaatctggacaatatttaaatggtttggaatttctacttca 240
           ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 265 gtttaggaatttgtaaagccaatctggacaatatttacatgatttggaatttctacttca 206

                
Query: 241 tgttt 245
           |||||
Sbjct: 205 tgttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 693
Length adjustment: 9
Effective length of query: 285
Effective length of database: 684
Effective search space:   194940
Effective search space used:   194940
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)