Query= MSMg01no293_n05.b1 MSMg01no293_n05.b1 CHROMAT_FILE:
MSMg01no293_n05.b1 PHD_FILE: MSMg01no293_n05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:21 2005
(239 letters)
>mm_chr18_54799820_54800458
Length = 639
Score = 420 bits (217), Expect = e-122
Identities = 235/243 (96%), Gaps = 4/243 (1%)
Strand = Plus / Plus
Query: 1 atttcatttcagccaactggatgacctcttccagtatttaaagctgatcagaccattaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttcatttcagccaactggatgacctcttccagtatttaaagctgatcagaccattaaa 260
Query: 61 gatactggatggaagtagaaatcaatgcatcttcatgatggttcctgctcaggtcactgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 gatactggatggaagtagaaatcaatgcatcttcatgatggttcctgctcaggccactgg 320
Query: 121 catgtcctgcttctctgtctctaaagctatctaattctttttctatttagtttaatttta 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 catgtcctgcttctctgtctctaaagctatctaattctttttctatttagttaaatttta 380
Query: 181 ttacatttatttatggcttgtttatctatgtattatgtatctatct----gtctatctat 236
||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||
Sbjct: 381 ttacatttatttatgtcttgtttatctatgtattatgtatctatctatctgtctgtctat 440
Query: 237 cta 239
|||
Sbjct: 441 cta 443
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space: 144900
Effective search space used: 144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no293_n05.g1 MSMg01no293_n05.g1 CHROMAT_FILE:
MSMg01no293_n05.g1 PHD_FILE: MSMg01no293_n05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:21 2005
(291 letters)
>mm_chr18_54958529_54959219
Length = 691
Score = 509 bits (263), Expect = e-148
Identities = 281/287 (97%)
Strand = Plus / Minus
Query: 1 tctcagtttgttctttagcttgaatctggaacaaattctggaacaggagcccgatgtagt 60
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 487 tctcagtttgttctttagcttgaatctggaacaaattctggaacaggagtctgatgtagt 428
Query: 61 gaggtaggtcagactcaccagaaacaggaacaacacagagagttgaattttacctggagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gaggtaggtcagactcaccagaaacaggaacaacacagagagttgaattttacctggagc 368
Query: 121 acgtactccaagagccccagtgaagcagcacatggacttgggtttccttctgtcacagga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 acgtactccaagagccccagtgaagcagcacatggacttgggtttccttctgtcacagga 308
Query: 181 aagacaagtgctcattgccaaagtccagaattggctaggagctctccttggtgctgagct 240
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 307 aagacaagtgcttattgccaaagtccagaattgactaggagctctccttggtgctgagct 248
Query: 241 agtacctgtaccatctatcgggtcccctgactaagagtagtaattag 287
||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 247 agtacctgtaccaacaatcgggtcccctgactaagagtagtaattag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space: 192324
Effective search space used: 192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
