Query= MSMg01no293_p04.b1 MSMg01no293_p04.b1 CHROMAT_FILE:
MSMg01no293_p04.b1 PHD_FILE: MSMg01no293_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:30 2005
(345 letters)
>mm_chr18_21261971_21262715
Length = 745
Score = 571 bits (295), Expect = e-167
Identities = 321/331 (96%), Gaps = 7/331 (2%)
Strand = Plus / Plus
Query: 1 caaaacctgttttaaagctccatctaaacagtcacgagacttattccgcggtatcctgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaaacctgttttaaagctccatctaaacagtcacgagacttattccgcggtatcctgag 260
Query: 61 aggtggaagcagaatacacaagatggataacacattaattgtggaggtctaggggaccat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggtggaagcagaatacacaagatggataacacattaattgtggaggtctaggggaccat 320
Query: 121 ccctagggagcgaatggctttgttgggaagaggaggcagtgtgctctcctagg-tgccta 179
|| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 321 ccttagggagcgaatggctttgttgggaagaggaggcagtgtgctctcctaggct-ccta 379
Query: 180 ggaggaattctacagtctttgatcttattgtggtgggtcagaccgtgtcttacctttcac 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ggaggaattctacagtctttgatcttattgtggtgggtcagaccgtgtcttacctttcac 439
Query: 240 ctatcctctctctttctttctctctctctccctctc--tctctctctctctctctgtgta 297
||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 440 ctatcctctctctttct--ctctctctc-ccctctccctctctctctctctctctgtgta 496
Query: 298 tgtttctctctctctctctctctctctctct 328
||| |||||||||||||||| ||||||||||
Sbjct: 497 tgtctctctctctctctctccctctctctct 527
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 97
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space: 247296
Effective search space used: 247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no293_p04.g1 MSMg01no293_p04.g1 CHROMAT_FILE:
MSMg01no293_p04.g1 PHD_FILE: MSMg01no293_p04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:30 2005
(340 letters)
>mm_chr18_21393732_21394473
Length = 742
Score = 619 bits (320), Expect = 0.0
Identities = 336/342 (98%), Gaps = 2/342 (0%)
Strand = Plus / Minus
Query: 1 ctttgtggtcttggaattggagcactccctatggccagtccctgagctc--cagtctttt 58
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 542 ctttgtggtcttggaattggagcactccctatggccagtccctgagctccacagtctttt 483
Query: 59 gcctgagtaacccaagtacaacctgagtgtctctcttgtaaatgactaggatgtagcaac 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gcctgagtaacccaagtacaacctgagtgtctctcttgtaaatgactaggatgtagcaac 423
Query: 119 tgcacaaggtgccatttcacaagtgcacagtgctccctggttttaaaagtgtccgtttac 178
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 422 tgcacaaggtgccatttcacaagtgcacagtgctccctggttttaaaagtgtcggtttag 363
Query: 179 aagttaagttacctgagcctgccactcctcctaattagtcttttacaatataacaggggc 238
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 362 aagttaagttacctgagcctgccactcctcctaattagtcttttagaatataacaggggc 303
Query: 239 atgacctcattgctcaggttaaatgtgggtggtgcccaccctgtcaccttgctttgaact 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 atgacctcattgctcaggttaaatgtgggtggtgcccaccctgtcaccttgctttgaact 243
Query: 299 ccgttcagttctgggatgccatttaactcagttttgttgagt 340
||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 242 ccgttcagttctgggatgccattgaactcagttttgttgagt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 742
Length adjustment: 9
Effective length of query: 331
Effective length of database: 733
Effective search space: 242623
Effective search space used: 242623
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
