BAC Information

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BAC

Clone NameMSMg01-294F07
Chromosome18 (Build37)
Map Location 67,005,677 - 67,005,962
singlet/doubletsinglet
Overlap genenone
Upstream geneGrp, Rax, Cplx4, Lman1, Ccbe1, Pmaip1, LOC100042852
Downstream geneMc4r, Gnal, Chmp1b, Mppe1, Impa2, B430212C06Rik, Cidea, Tubb6, Afg3l2, Slmo1, Spire1, Cep76, Tnfsf5ip1, Ptpn2, Seh1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294F07.T7 (MSMg01no294_f07.b1)MSMg01-294F07.TJ (MSMg01no294_f07.g1)
ACCAG422532AG422533
length738747
length of high quality
(start - end)
234 (130 - 363)288 (74 - 361)
definitionCHROMAT_FILE: MSMg01no294_f07.b1 PHD_FILE: MSMg01no294_f07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:59 2005CHROMAT_FILE: MSMg01no294_f07.g1 PHD_FILE: MSMg01no294_f07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTTCTTTTTCTCCTCTACCATCATCATGAGATATGCTTTTAAA
TCCAGGTCTACCTTTTCATTTGTGCCCGGGTGTCCTGGATTGGGCGAAGT
GGGCGTTCTGGATTCTGATGATGGTGAGTGGTCCTGGCTTCTGTTAGTAG
GATTCTTACGTTTACCTTTCGCCATCTGGCAATCTCTGGAGTTAGTTGTT
ATAGTTGTCTTTGTTAAAAGATTGTTCCTCTGTTGATTTTGTTACCCTCT
ATCAGCAGGCGTGGGAGACAAGCTCTCTTCTCTGAGTTTCAGTGGTCAGA
GCAGTCTCTGTTTTTTTTTCTCCTCTCTCCCCAAGGTGTACAGTTATCTG
GTGTTTGGACCTCCTCCTGGCTGAAAGAGAAAAGAACAAAACAGGATCTT
TCCCAGAAGCTGTGTTGCTTTGGCCAGGAAGGTGGCCAGTTGTCTGGAGT
CGAAGATGTCGCAGCCTCAGAAGCTCTGTGGCTCTTGCCGGGAAGGTGGC
TGGTTGTCTGGAGCTGAGGATGGTGCCGCCCCAGAATCTCTGCGACTCTC
TCGCCCGTTCCAGAAAAGGCTGGCACTCTGTATTCCCACGGTCACCCGTG
CATCCTGTCCTCCGCGGAGTCCTGGAGTCTAGAAGGCTTCCGCCGGTGCC
TGTGGCACAAACCTTCTCATGTCAGGCAGACCCCCTTG
CAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGCATTGCTCTTCCAACTACCTTTCAG
GAAAACTATGCCCTAAATACACATCCAGCTGACTTCCTCACCCCTTCGAG
TATTGCTGAGATAGACCCTCATTAATGGTTACTTGGGGAAGCCATTTTTA
AAGTCACAAGCCCGCCAGAGAGTACTATCATTGCTCACTATCTTTCTCAC
AATAATCAACAGATCAAACTGATCACCAAGGTATCAATCATGTTTATTGT
TTCCCTCCATTCACGAACACCGAATATTAGGAGAGTACAAAGGACTTCAT
TTTCTGTCAGTGTTGGGTGNTTTCCCGNCCAGAACCCCCAGTCGGTTAGG
GTAAGAGCTTAACAGAAACTTGCTAAGAGAAAAAAAAAAGAAAAACGTGG
CGGCAGAAGCAAGGAAAGCAGGTGGACTGGCTTGGCAGAAGCATAGTTTA
AAGGACACTGAGACAGCTCACTGTGTTAAGGCACTTTGCAGCCAGGCCTT
GATGATTTCACTGCTCATGACCCACGTGGTGCAAAAAGAAACCCACCTCC
TGAAAGTTGTCACCTGACCACTGCTTGCCCTCTGTGCTGTACGCGCTCCT
TCTTGCACGCTTTATTTTTATGAACAACTTCCTATTCCACCAATGTCACT
TATAAGAAATACCATTTAAAGGGCTTAATGGAAAGTGGGGTTAAGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_f07.g1 MSMg01no294_f07.g1 CHROMAT_FILE:
MSMg01no294_f07.g1 PHD_FILE: MSMg01no294_f07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:59 2005
         (288 letters)



>mm_chr18_67005477_67006163
          Length = 687

 Score =  509 bits (263), Expect = e-148
 Identities = 281/287 (97%), Gaps = 1/287 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcattgctcttccaactacctttcaggaaaactatgccctaaatacacatccagctgac 60
           ||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||
Sbjct: 486 tgcattgctcttccaactacctttcaggaaaactatgccctaaatgcgcatacagctgac 427

                                                                       
Query: 61  ttcctcaccccttcgagtattgctgagatagaccctcattaatggttacttggggaagcc 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ttcctcaccccttcaagtattgctgagatagaccctcattaatggttacttggggaagcc 367

                                                                       
Query: 121 atttttaaagtcacaagcccgccagagagtactatcattgctcactatctttctcacaat 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 366 atttttaaagtcacaagcccgccagtgagtactatcattgctcactatctttctcacaat 307

                                                                       
Query: 181 aatcaacagatcaaactgatcaccaaggtatcaatcatgtttattgtttccctccattca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 aatcaacagatcaaactgatcaccaaggtatcaatcatgtttattgtttccctccattca 247

                                                          
Query: 241 cgaacaccgaatattaggagagtacaaaggacttcattttctgtcag 287
           |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 246 cgaacaccgaatattaggagagtacaaaggacttcattttct-tcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 687
Length adjustment: 9
Effective length of query: 279
Effective length of database: 678
Effective search space:   189162
Effective search space used:   189162
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)