BAC Information

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BAC

Clone NameMSMg01-294I20
Chromosome18 (Build37)
Map Location 45,766,369 - 45,766,688
singlet/doubletsinglet
Overlap geneKcnn2
Upstream geneLOC100042883, Ythdc2, LOC626309, LOC225457, LOC100042900
Downstream geneTrim36, LOC100042905, Pggt1b, Ccdc112, EG225468, LOC100042916, Mospd4, LOC100042204, Fem1c, Ticam2, Eif1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294I20.T7 (MSMg01no294_i20.b1)MSMg01-294I20.TJ (MSMg01no294_i20.g1)
ACCAG422695AG422696
length743747
length of high quality
(start - end)
323 (35 - 357)293 (66 - 358)
definitionCHROMAT_FILE: MSMg01no294_i20.b1 PHD_FILE: MSMg01no294_i20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:15 2005CHROMAT_FILE: MSMg01no294_i20.g1 PHD_FILE: MSMg01no294_i20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAAAGA
GGTTTTATTTTGGTGTGTGAGGGCAGGGGTAGAGCTCTTTTGCGATAAGT
TCTCTCCTTATACTGTATAGCACAGGCTAGCCCTAAATTCCATACATAGC
CTAGTTTGGCCTCCTATCTCAACCTCCAGAGTACTTAAGTAGCAGACACA
CTCCTCCACACCCAGCCTGAGATTCTCAGTTCTGAGGCACCAGGAGCAGA
ACTTGCCCTGTGTGTTCACATCAAGAGCCAAGTCAGATTGCCTGTTACTG
CTGATGCACTCTGGGAGTTATAAGCACGGGAGGCTGGGGGTGAGTGCAAA
GGACATATTGTCAGTACCCTACCACCGGCAGCTTTAAGAAAGGAAGAGAT
AAGGGTGACCCACGGACACCCATATACATCTGGGTATTCCTGTCTGCTTT
GGGGCTGTCACTAAAGCCTCCTTAGAACAGGGTCCCTTCTGTCTTCCCTC
TGTAATTCCAGCAACGTCTCCGGCTGCACTGAGTTGTGAGCCCCTGAAGC
AAGAGCCAAGATAAAAGACAGAGGAGCTCTGTCTGAAGTCTGTGTGCTCC
AGCAGATTACACAGAAATGCTTCGTCCTGAACACATGGCAGGGCGTCCAA
CAGAGCTGGACCAGGCCTGCCACATTTCTGGGAGGCCTCTTCCTGCCAAG
CACAGAGGGAGGCTTCAGATTCTCAAGACCAGTGCGTCTGCAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXATAGCCACTATGCCTCATGGTCTCCATGACAAGAC
CCAGGTCAGAAACTTGTATCTCTCAGCCTCCAGATTAGGATCACAGGTGA
ACCTTCCAATTCTGGATTGTAGTTCATCCCAGATATAGTCAACAGAGAGA
AAGCAACCTCAGTTGAGAAAAAGACTCCATAAGGTCCAGCATTTTCTCAG
TTAGTGATCAATGGGGAGGGCTTGGAGCATTGTGGGTGGTGCCATACCTG
GGTAGGTGATCCTGGGTTCTATAAGAAAGCAGGCTGAACAAGTCACTGGG
AGCAAGCCTTTGTTCAGCACCTACCCTTGGCTTTTGCATTAACTTCTGCC
TCCAGAATTTTGCTTTGTTTGAGTTCCTGACCTAACTTCTTTCACTACTG
AACATCAATATAGATGTTTAAGCCAAATAAACCTTTTTTCTCCCCAACTT
GCTTTCCGGTCATGCTGTTTTGTTGCAGTGATAGAAATCCTAAGACAGTG
CAGTTGTAAAATAAACTCATGAGACCCAGGTTTCATAAGGAATTGATCAG
ATGTGAGCTAAATTAAAAGCTTTAGGTTTGGGATAAAAGTAGAGCATAGG
AGGGTGCTGTATTTCTCATATAAGCCATCCCTACTTTAATCAAGAAGGAA
CTATCAATAATAACATATAATGATACAACCTGTCTTTACTTTGCGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_i20.b1 MSMg01no294_i20.b1 CHROMAT_FILE:
MSMg01no294_i20.b1 PHD_FILE: MSMg01no294_i20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:15 2005
         (323 letters)



>mm_chr18_45766166_45766888
          Length = 723

 Score =  619 bits (320), Expect = 0.0
 Identities = 320/320 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctaaagaggttttattttggtgtgtgagggcaggggtagagctcttttgcgata 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 ggaattctaaagaggttttattttggtgtgtgagggcaggggtagagctcttttgcgata 464

                                                                       
Query: 64  agttctctccttatactgtatagcacaggctagccctaaattccatacatagcctagttt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 agttctctccttatactgtatagcacaggctagccctaaattccatacatagcctagttt 404

                                                                       
Query: 124 ggcctcctatctcaacctccagagtacttaagtagcagacacactcctccacacccagcc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ggcctcctatctcaacctccagagtacttaagtagcagacacactcctccacacccagcc 344

                                                                       
Query: 184 tgagattctcagttctgaggcaccaggagcagaacttgccctgtgtgttcacatcaagag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tgagattctcagttctgaggcaccaggagcagaacttgccctgtgtgttcacatcaagag 284

                                                                       
Query: 244 ccaagtcagattgcctgttactgctgatgcactctgggagttataagcacgggaggctgg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 ccaagtcagattgcctgttactgctgatgcactctgggagttataagcacgggaggctgg 224

                               
Query: 304 gggtgagtgcaaaggacata 323
           ||||||||||||||||||||
Sbjct: 223 gggtgagtgcaaaggacata 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)