BAC Information

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BAC

Clone NameMSMg01-295H09
Chromosome18 (Build37)
Map Location 62,573,186 - 62,573,497
singlet/doubletsinglet
Overlap geneHtr4
Upstream geneLOC667675, 4933429F08Rik, Csnk1a1, Il17b, Pcyox1l, LOC100042730, Grpel2, Afap1l1, LOC100042738, Ablim3, Sh3tc2, Adrb2
Downstream geneFbxo38, Spink10, EG408198, 2700046A07Rik, Apcdd1, Napg, 9430028L06Rik, 9030411M15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295H09.T7 (MSMg01no295_h09.b1)MSMg01-295H09.TJ (MSMg01no295_h09.g1)
ACCAG423349AG423350
length820753
length of high quality
(start - end)
319 (43 - 361)286 (72 - 357)
definitionCHROMAT_FILE: MSMg01no295_h09.b1 PHD_FILE: MSMg01no295_h09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:24 2005CHROMAT_FILE: MSMg01no295_h09.g1 PHD_FILE: MSMg01no295_h09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATTGTGTGTCATGTGACTCAGGATAGGAAAGAAAGACACCGGGTGATA
TTTGTTAGGTCACTGGTGCCCCGAATGAGGTCCGCTCCTCACATTGCTCT
GCTCTTACCTGTCCAGGGAAATACAGCACAGGTGAAAGATCGATGCTGTG
GTAAGTAGGACATCCAGAGAGGTCCGGACCAGGCAGAACATCTCCCCATA
AGCCCAGATGTCTTGGACCAGCTCAATGGCACCAAAGGGCATCACCAGCA
CCGAAACCAGCAGGTCTTTTTAGGCGAGAGACACAATGAAATAGTTGGTT
TTTATTTCCCTGNGTTGTCCCCAGGCATCCCCCAGGTGGAGGGGGAAGGG
TGTGGTTTTTCCCCCCCCCCTTATAAAAAAAATAAAAAAATTTTGGGGGG
GGGCGGGTCCCTATCCTCTTTGTCTCCCTTTTTCTCTAGGTTCTTATCAA
ACTTATTTCTTCTACTTTCCCTATTTTTTTATCATCTTAAATCGCCTGTT
TCTTGTTTACCCAATCCCCGCGCTTCACGCATTAAATACCACTTTTATTA
TTTCTATATTTTTCATCCAATCCATTACCTTCTTTTCCTCTAAGTTATCT
TCCTTATGCATTACTCTCGCGAGCGTATTTTCTACTAAATCTGTTGGGTT
TATCACGCCTTTCTTTCTATTCCTGTGTTTTTCGGCCATCATCTTTAACT
TATTTCTCCGTCCATTTTCTTCCTCTTTATCCCTACCTTCTCTTGTATCT
GTCCGTCTTTCGTATAATTN
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCACTTGAGGAATACCGAATGGCAGAGAA
GCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCA
AAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAATATCAAA
AATTCAGGTGACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGGAACACT
CCTCCATTGTTGATGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAA
TCTGGCGGTTCCTCAGAAAAGTGGACATAGTACTACCAGAGGATCCCGCA
ACACCTCTTTTTTTTTTATCTCCCCACCCACGTCCCAACTGGTAAGAAGG
ACACATGCTCTTCCCCCCCCACAAAAAAAAAAAAATCTAATAGACGGAGG
CTGGACAGAACCCATATGCCCCTTAACAGAGGAATGGATACTGAAAATGT
GGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTT
ATGAAATTTCTAGGCAAATGGAAGGATCTGGAGGGTATCATCCTGAGTGA
GGTAACCCAATCACAAAGGAACTCTCCAAATATGTACTCTCTGATATGCG
TATATTAGCCCAGAAGCTTACGATATTTGCGATTTACCATTCTTTTTGCT
AATATCATGAAACCTCATGGATTATGTACGACCTAATTCTGGCAACTTAT
CCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_h09.b1 MSMg01no295_h09.b1 CHROMAT_FILE:
MSMg01no295_h09.b1 PHD_FILE: MSMg01no295_h09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:24 2005
         (319 letters)



>mm_chr18_62572983_62573701
          Length = 719

 Score =  536 bits (277), Expect = e-157
 Identities = 303/317 (95%), Gaps = 10/317 (3%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcattgtgtgtcatgtgactcaggataggaaagaaagacaccgggtgatatttgt 63
           |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ggaactcattgtgtgtgatgtgactcaggataggaaagaaagacaccgggtgatatttgt 456

                                                                       
Query: 64  taggtcactggtgccccgaatgaggtccgctcctcacattgctctgctcttacctgtcca 123
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 taggtcactggtgtctcgaatgaggtccgctcctcacattgctctgctcttacctgtcca 396

                                                                       
Query: 124 gggaaatacagcacaggtgaaagatcgatgctgtggtaagtaggacatccagagaggtcc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 gggaaatacagcacaggtgaaagatcgatgctgtggtaagtaggacatccagagaggtcc 336

                                                                       
Query: 184 ggaccaggcagaacatctccccataagcccagatgtcttggaccagctcaatggcaccaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ggaccaggcagaacatctccccataagcccagatgtcttggaccagctcaatggcaccaa 276

                                                                       
Query: 244 agggcatcaccagcaccgaaaccagcaggtc-----tttttaggcgagagacacaatgaa 298
           |||||||||||||||||||||||||||||||          |||||||||||||||||||
Sbjct: 275 agggcatcaccagcaccgaaaccagcaggtcagcaa-----aggcgagagacacaatgaa 221

                            
Query: 299 atagttggtttttattt 315
           |||||||||||||||||
Sbjct: 220 atagttggtttttattt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)