BAC Information

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BAC

Clone NameMSMg01-295L08
Chromosome18 (Build37)
Map Location 77,075,293 - 77,075,552
singlet/doubletsinglet
Overlap genenone
Upstream geneZbtb7c, 4833419G08Rik, LOC668184, Smad2, LOC668188, EG639576
Downstream geneEG664805, LOC620139, Ier3ip1, Hdhd2, Katnal2, Pias2, EG639653, St8sia5, Loxhd1, Rnf165, 8030462N17Rik, 4930465K10Rik, Ccdc5, Atp5a1, Pstpip2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295L08.T7 (MSMg01no295_l08.b1)MSMg01-295L08.TJ (MSMg01no295_l08.g1)
ACCAG423527AG423528
length777750
length of high quality
(start - end)
250 (44 - 293)260 (65 - 324)
definitionCHROMAT_FILE: MSMg01no295_l08.b1 PHD_FILE: MSMg01no295_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:43 2005CHROMAT_FILE: MSMg01no295_l08.g1 PHD_FILE: MSMg01no295_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCACCCTCTCCATCATGCGAAAGCTATGGTTGAACTACCCAGGCAAT
ATTCTGTAAGTCAATCTAATGAATACCATTTTAATACATTTTTCTAAATT
CTATCAATTCAGTTCCTTTAGAGAGTTCTTAGTAACCCACCAATGGTACA
CAGACCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCCCTCTCTCTCCAATAGA
CTAGCCTCAGGAGGGTTATTATTTGACTTCACATAGACCCAGAGACACAG
CAGGGTATATTTTTTTTTTCCCCCGCCCCCTCCCTTTTGGATCTCAAAAG
TCTCATTCTTTGTACCCCCCCTACAAAAAAAATAAAAAATGAAGGGGGGG
GGGGGTGCATATATTATGAAAAGCCTGGCATTGTATCTCTCTGTGTCTAG
TTGCTTTTTCCTTTCTGGTTTGTCATCACCCACTGAGGCCTCGCGACTAT
AGATTATTGAGCTTCGCTTTCATTCTGTTTGTTTGCGATACATTTATCCC
CTTTTTCTAATCCTGATCCTTTTTTTGCCTTTTATTACGTTCTATCCTTA
CCCGTTTTACATGTTTTCTCTCGCTTATTCTATGCTTCTCTTTCTGTTGT
CCTTAGCATACGTCTTCTGTGTCGTACCGATGCCAATACCCATTCGCTTT
TACGATGCGGCGTATTCTTTGCTTATG
AATGATAGTGGGTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTAGCAAAGTCATAATCCTCTAAGAGGGACTTGCAT
TACTCCATTTAAAAAAAATTATCATCTATTAACTGTATAAAGTAATAGGG
TTTGTTTTGATGCTTTCATCCACATCTAATGTACTTGCTATTTGTCCCAG
TTTGATCGTATTTACCTCAACTATGACCATTTTCCTCTTCTCCCTTTTAG
GACTTGCATTTTTGTTGCTAGTTGCCTGACCATGCTCTTAATCAAAATCA
TTTTGAAAACAGCGCTACAGAAGTACCATGCACTTGCCATAAATCCAACC
CATTCCAAGTGTATATTTATTTCACCCCCCCCCCCTGACCTACTGCCATC
ATGGTCTGTCTTCAAGCCCCTCTGTAAATAAAAAAAAAACCCTTGTCGAG
GTGTGGTCATTAAGTGTTTTCACCCCTTGGCTCCAAGAATTCACGATTCT
GCTCACTTCTTACTTACATTTATTTTTTTGCATATCTCATACAAATAAAA
TCATATAATATGTACTCCAAAATTCTAACTTTTCTTATTTTTTGCATCTG
GCCTTTTAAAAATATTTTAACGAGTCTACGATTTATCCCCGTTCTCAGCA
CTTTTTTCACGTTCTAATCTGCATTTTATCGCACTGTATCCCTTTCTTCA
CTTATTTATCCCACTTTTTGCCCTATGCTTTCCACTTTTTTCTACCCTCN

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_l08.g1 MSMg01no295_l08.g1 CHROMAT_FILE:
MSMg01no295_l08.g1 PHD_FILE: MSMg01no295_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:43 2005
         (260 letters)



>mm_chr18_77075093_77075752
          Length = 660

 Score =  456 bits (236), Expect = e-133
 Identities = 254/260 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttagcaaagtcataatcctctaagagggacttgcattactccatttaaaaaaaattatca 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 460 ttagcaaagtcataatcctctaagagggacttgcattactccattttaaaaaaattagca 401

                                                                       
Query: 61  tctattaactgtataaagtaatagggtttgttttgatgctttcatccacatctaatgtac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tctattaactgtataaagtaatagggtttgttttgatgctttcatccacatctaatgtac 341

                                                                       
Query: 121 ttgctatttgtcccagtttgatcgtatttacctcaactatgaccattttcctcttctccc 180
           |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 340 ttgctatttgtcccagtttgatcgtatttacctcaactatgactgttttcctcttctccc 281

                                                                       
Query: 181 ttttaggacttgcatttttgttgctagttgcctgaccatgctcttaatcaaaatcatttt 240
           ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 280 ttttaggacttgcatttttgttgctagtcacctgaccatgctcttaatcaaaatcatttt 221

                               
Query: 241 gaaaacagcgctacagaagt 260
           ||||||||||||||||||||
Sbjct: 220 gaaaacagcgctacagaagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 260
Length of database: 660
Length adjustment: 9
Effective length of query: 251
Effective length of database: 651
Effective search space:   163401
Effective search space used:   163401
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)