Query= MSMg01no295_p03.b1 MSMg01no295_p03.b1 CHROMAT_FILE:
MSMg01no295_p03.b1 PHD_FILE: MSMg01no295_p03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:00 2005
(239 letters)
>mm_chr18_21262025_21262663
Length = 639
Score = 414 bits (214), Expect = e-120
Identities = 231/238 (97%), Gaps = 5/238 (2%)
Strand = Plus / Plus
Query: 1 cctgagaggtggaagcagaatacacaagatggataacacattaattgtggaggtctaggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctgagaggtggaagcagaatacacaagatggataacacattaattgtggaggtctaggg 260
Query: 61 gaccatccctagggagcgaatggctttgttgggaagaggaggcagtgtgctctcctagg- 119
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaccatccttagggagcgaatggctttgttgggaagaggaggcagtgtgctctcctaggc 320
Query: 120 tgcctaggaggaattctacagtctttgatcttattgtggtgggtcagaccgtgtcttacc 179
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 t-cctaggaggaattctacagtctttgatcttattgtggtgggtcagaccgtgtcttacc 379
Query: 180 tttcacctatcctctctctttctttctctctc---tctccctctctctctctctctct 234
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 380 tttcacctatcctctctctttctctctctctcccctctccctctctctctctctctct 437
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space: 144900
Effective search space used: 144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no295_p03.g1 MSMg01no295_p03.g1 CHROMAT_FILE:
MSMg01no295_p03.g1 PHD_FILE: MSMg01no295_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:00 2005
(289 letters)
>mm_chr18_21393784_21394474
Length = 691
Score = 542 bits (280), Expect = e-158
Identities = 287/290 (98%), Gaps = 2/290 (0%)
Strand = Plus / Minus
Query: 1 ctttgtggtcttggaattggagcactccctatggccagtccctgagctc--cagtctttt 58
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 490 ctttgtggtcttggaattggagcactccctatggccagtccctgagctccacagtctttt 431
Query: 59 gcctgagtaacccaagtacaacctgagtgtctctcttgtaaatgactaggatgtagcaac 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gcctgagtaacccaagtacaacctgagtgtctctcttgtaaatgactaggatgtagcaac 371
Query: 119 tgcacaaggtgccatttcacaagtgcacagtgctccctggttttaaaagtgtccgtttag 178
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 370 tgcacaaggtgccatttcacaagtgcacagtgctccctggttttaaaagtgtcggtttag 311
Query: 179 aagttaagttacctgagcctgccactcctcctaattagtcttttagaatataacaggggc 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 aagttaagttacctgagcctgccactcctcctaattagtcttttagaatataacaggggc 251
Query: 239 atgacctcattgctcaggttaaatgtgggtggtgcccaccctgtcacctt 288
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 atgacctcattgctcaggttaaatgtgggtggtgcccaccctgtcacctt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 691
Length adjustment: 9
Effective length of query: 280
Effective length of database: 682
Effective search space: 190960
Effective search space used: 190960
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
