Query= MSMg01no296_g08.b1 MSMg01no296_g08.b1 CHROMAT_FILE:
MSMg01no296_g08.b1 PHD_FILE: MSMg01no296_g08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:34 2005
(229 letters)
>mm_chr18_48090832_48091456
Length = 625
Score = 400 bits (207), Expect = e-116
Identities = 222/229 (96%), Gaps = 4/229 (1%)
Strand = Plus / Minus
Query: 1 atccatatagtacataaaggtaaaataaaaatatttaatccaagaaattcatacaaagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 atccatatagtacataaaggtaaaataaaaatatttaatccaagaaattcatacaaagag 366
Query: 61 tgattagccttgaaacaaaatccttgaataatgatgcccatttaaaaatccatcctgttt 120
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 365 tgatttgccttgaaacaaaatccttgaataatgatgcccatttaaaaatccatcttgttt 306
Query: 121 ttaatgtatcttttacattgaataaaatatcatataaaactgacagtgtgatgcagtata 180
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ttaat----cttttacattgaataaaatatcatataaaactgacagtgtgatgcagtata 250
Query: 181 ctacattatatatacacactcatgtatgtggctagaacataaatatgta 229
||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 249 ctacattatatatacacactcatgtatttggctagaacataaatatgta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 625
Length adjustment: 9
Effective length of query: 220
Effective length of database: 616
Effective search space: 135520
Effective search space used: 135520
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no296_g08.g1 MSMg01no296_g08.g1 CHROMAT_FILE:
MSMg01no296_g08.g1 PHD_FILE: MSMg01no296_g08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:34 2005
(356 letters)
>mm_chr18_47919859_47920613
Length = 755
Score = 611 bits (316), Expect = e-179
Identities = 346/356 (97%), Gaps = 1/356 (0%)
Strand = Plus / Plus
Query: 1 cacctaacggtgacatttatcaagaagacaaaggaagagccaaaggaagaacaggaaggc 60
||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 cacctaacgatgacatttatcaagaagacaaaggaagagggaaaggaagaacaggaaggc 260
Query: 61 agataaaagccgtgagagaattgttaaaagattaaataatttggatattgagttaaatag 120
||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 261 agataggagccgtgagagaattattaaaagattaaataatttgaatattgagttaaatag 320
Query: 121 aattaaggcattttaattagatgccttgatagcaaatgtgctgattttaccctttcattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattaaggcattttaattagatgccttgatagcaaatgtgctgattttaccctttcattt 380
Query: 181 ctcgttacttctagtttggaggaaaacctgacctttttctagtgtgtttcgtggtaccca 240
|||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 381 ctcgttacttctagtttgaaggaaaatctgacctttt-ctagtgtgtttcgtggtaccca 439
Query: 241 aagaattcaaccattcgtaagatgcacagccccctccctccgcctgctctgctgctctcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aagaattcaaccattcgtaagatgcacagccccctccctccgcctgctctgctgctctcc 499
Query: 301 gaggctgcgtgcctttcatttgagcttccttccagctccccagcctgttttctcca 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gaggctgcgtgcctttcatttgagcttccttccagctccccagcctgttttctcca 555
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 755
Length adjustment: 9
Effective length of query: 347
Effective length of database: 746
Effective search space: 258862
Effective search space used: 258862
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
