BAC Information

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BAC

Clone NameMSMg01-296G13
Chromosome18 (Build37)
Map Location 30,529,068 - 30,529,721
singlet/doubletsinglet
Overlap genenone
Upstream gene4930578E11Rik, LOC666073, Pik3c3
Downstream geneLOC666094, LOC666100, EG666111, EG666114, LOC433168, Rit2, EG666130
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-296G13.T7 (MSMg01no296_g13.b1)MSMg01-296G13.TJ (MSMg01no296_g13.g1)
ACCAG424029AG424030
length749732
length of high quality
(start - end)
362 (385 - 746)656 (77 - 732)
definitionCHROMAT_FILE: MSMg01no296_g13.b1 PHD_FILE: MSMg01no296_g13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:35 2005CHROMAT_FILE: MSMg01no296_g13.g1 PHD_FILE: MSMg01no296_g13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTCTTTCTCATATTGAGTTCATCTCA
GTCTTAAAATATTTACATGTTCTCTATTTCAAAAGAGATTTAATTTTTAG
AATACTGCACTGAAGACTATCACACGTTCAGATAATGAGATGGAACCTAT
ATTACTGGGTCAGAAGACGGAAGCCCCAAGGATACTCAGAAACACAAAGT
TGGAAGGTTTTTTCCTGGAGTCAGCACAGAAAATAATATTGCATTTAACT
GTGTGATATTTTAGAAAGAAAAGAGTGAGACTTTCTGCCCTTCACCCCAC
GAATTCTGAGGTTGTACACCATAACAACTTTTGGGATAGAATTTGTCTTA
ATTAGGATTTTACTGCTGCGAACAGGCACCATAACCAAGGCAACTCTTAT
AAGGACAACATTTAATGGGGGCTGGCTTACAGGTTCACAGGTTCAGTCCA
TTAACATCAAGGCAGGAACTGGTGCTATCCAGGCAGGCATGGTGCAGGAG
GAGCTGAGAGTTCTACATCTCACCTGAAAGCTGCTATCAGAATACTGGCT
TCCAAGCAGCTAGGATGAGGGTCTTATAGCTCACACGCACAGTGACACAC
CTACTCCAACAGGGCCATACCTTCTAATAGTGCCATTCCCTGCGCTGAAC
CTATACAAACCATCATATTCCACTCCCTGACCCCCATAGGCTTGTTCAA
GCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTCTTTCTCATATTGAGTTCATC
TCAGTCTTAAAATATTTACAGTTCTATATTTCAAAAGAGATTTAATTTTT
AGAATACTGCACTGAAGACTATCACACGTTCAGATAATGAGATGGAACCT
ATATTACTGGGTCAGAAGACGGAAGCCCCAAGGATACTCAGAAACACAAA
GTTGGAAGGTTTTTTCCTGGAGTCAGCACAGAAAATAATATTGCATTTAA
CTGTGTGATATTTTAGAAAGAAAAGAGTGAGACTTTCTGCCCTTCACCCC
ACGAATTCTGAGGTTGTACACCATAAGAACTTTTGGGATAGAATTTGTCT
TAATTAGGATTTTACTGCTGTGAACAGGCACCATAACCAAGGCAACTCTT
ATAAGGACAACATTTAATGGGGGCTGGCTTACAGGTTCACAGGTTCAGTC
CATTAACATCAAGGCAGGAACTGGTGCTATCCAGGCAGGCATGGTGCAGG
AGGAGCTGAGAGTTCTACATCTCACCTGAAAGCTGCTATCAGAATACTGG
CTTCCAAGCAGCTAGGATGAGGGTCTTATAGCTCACACGCACAGTGACAC
ACCTACTCCAACAGGGCCATACCTTCTAATAGTGCCATTCCCTGCGCTGA
ACCTATACAAACCATCATATTCCACTCCCTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no296_g13.g1 MSMg01no296_g13.g1 CHROMAT_FILE:
MSMg01no296_g13.g1 PHD_FILE: MSMg01no296_g13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:35 2005
         (656 letters)



>mm_chr18_30528868_30529922
          Length = 1055

 Score = 1087 bits (562), Expect = 0.0
 Identities = 634/658 (96%), Gaps = 7/658 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtctttctcatattgagttcatctcagtcttaaaatatttacagttctatatttcaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtctttctcatattgagttcatctcagtcttaaaatatttacagttctatatttcaaaa 260

                                                                       
Query: 61  gagatttaatttttagaatactgcactgaagactatcacacgttcagataatgagatgga 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaggtttaatttttagaatactgcactgaagactatcacacgttcagataatgagatgga 320

                                                                       
Query: 121 acctatattactgggtcagaagacggaagccccaaggatactcagaaacacaaagttgga 180
           ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 acctatattactgggtctgaagacagaagccccaaggatactcagaaacacaaagttgga 380

                                                                       
Query: 181 aggttttttcctggagtcagcacagaaaataatattgcatttaactgtgtgatattttag 240
           |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 aggttttt-cctggagtcagcacagaaaataatattgcacttaactgtgtgatattttag 439

                                                                       
Query: 241 aaagaaaagagtgagactttctgcccttcaccccacgaattctgaggttgtacaccataa 300
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 440 aaagaaaagagtgagactttctgcccttcaccccactaattctgaggttgtacaccataa 499

                                                                       
Query: 301 gaacttttgggatagaatttgtcttaattaggattttactgctgtgaacaggcaccataa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gaacttttgggatagaatttgtcttaattaggattttactgctgtgaacaggcaccataa 559

                                                                       
Query: 361 ccaaggcaactcttataaggacaacatttaatgggggctggcttacaggttcacaggttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ccaaggcaactcttataaggacaacatttaatgggggctggcttacaggttcacaggttc 619

                                                                       
Query: 421 agtccattaacatcaaggcaggaactggtgctatccaggcaggcatggtgcaggaggagc 480
           ||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 620 agtccat-aacatcaaggcaggaactggtaccatccaggcaggcatggtgcaggaggagc 678

                                                                       
Query: 481 tgagagttctacatct-cacctgaaagctgctat-cagaatactggcttccaagcagcta 538
           |||||||||||||||| || ||||| ||||| || ||||||||| | ||||| |||||||
Sbjct: 679 tgagagttctacatcttcatctgaaggctgc-attcagaatactagtttccaggcagcta 737

                                                                       
Query: 539 ggatgagggtcttatagctcacacgcacagtgacacacctactccaacagggccatacct 598
           ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 738 ggatgagggtcttataggtcacacccacagtgacacacctactccaacagggccatacct 797

                                                                     
Query: 599 tctaatagtgccattccctgc-gctgaacctatacaaaccatcatattccactccctg 655
           ||||||||||||||||||| | || || |||||||||||||||| |||||||||||||
Sbjct: 798 tctaatagtgccattccct-ctgccgatcctatacaaaccatcacattccactccctg 854


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1055
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1045
Effective search space:   675070
Effective search space used:   675070
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)