Query= MSMg01no296_h12.b1 MSMg01no296_h12.b1 CHROMAT_FILE:
MSMg01no296_h12.b1 PHD_FILE: MSMg01no296_h12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:40 2005
(324 letters)
>mm_chr18_79772092_79772815
Length = 724
Score = 590 bits (305), Expect = e-173
Identities = 317/321 (98%)
Strand = Plus / Minus
Query: 4 ggaattcatttaatcctcaaaacattcacgagagatactagttattacaattcttggttt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ggaattcatttaatcctcaaaacattcacgagagatactagttattacaattcttggttt 454
Query: 64 tatagatgatgcacccacagcccagagatgcaatcggtaggcttgggatttgggtcgaga 123
||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tatagatgaggcaaacacagcccagagatgcaatcggtaggcttgggatttgggtcgaga 394
Query: 124 catccttgacctgtaatccacacttgtgaccaagatgttaaattgctcatagactataaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 catccttgacctgtaatccacacttgtgaccaagatgttaaattgctcatagactataaa 334
Query: 184 caaaagtaaaaaattctggccttaaaattactcaataattccttaataataattaataat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 caaaagtaaaaaattctggccttaaaattactcaataattccttaataataattaataat 274
Query: 244 aaaaccttaataataatttttgtatggactcagtgttttatcttttaacatcttctgggc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 aaaaccttaataataatttttgtatggactcagtgttttatcttttaacatcttctgggc 214
Query: 304 aatgatggcacttttttctgg 324
||||||||||| |||||||||
Sbjct: 213 aatgatggcacatttttctgg 193
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space: 225225
Effective search space used: 225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no296_h12.g1 MSMg01no296_h12.g1 CHROMAT_FILE:
MSMg01no296_h12.g1 PHD_FILE: MSMg01no296_h12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:40 2005
(283 letters)
>mm_chr18_79597296_79597980
Length = 685
Score = 474 bits (245), Expect = e-138
Identities = 277/293 (94%), Gaps = 10/293 (3%)
Strand = Plus / Plus
Query: 1 atggataaaacttgaaatcatttccttaccagaaaagagatttgcttccagtcaccacat 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 193 atggataaaacttgaaatcatttccttaccagaaaagagatttgctttcagtcaccacat 252
Query: 61 tttccaaaattgacaaatattgtaattctctgtgttataaattctgtacataattatgta 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tttccaaaattgacaaatattataattctctgtgttataaattctgtacataattatgta 312
Query: 121 tatatata--------atcaatattttataattacatagtactctttataaa--cactct 170
|||||||| ||||||||||||||||||||||||||||||| |||| |||| |
Sbjct: 313 tatatatatatatataatcaatattttataattacatagtactctttgtaaaaacacttt 372
Query: 171 ctccgttctttgaattactgtttgaagttatttgcctttagactgcacagtttctttctg 230
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 373 ctctgttctttgaattactgtttgaagttatttgcctttagactgcacagcttctttctg 432
Query: 231 cattttactataagatggtttgcctttcatatttgaaggtagttttactgtgt 283
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 cattttactataagatggtttgcctttcatatttgaaggtagttttactgtgt 485
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 685
Length adjustment: 9
Effective length of query: 274
Effective length of database: 676
Effective search space: 185224
Effective search space used: 185224
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
