Query= MSMg01no296_k04.b1 MSMg01no296_k04.b1 CHROMAT_FILE:
MSMg01no296_k04.b1 PHD_FILE: MSMg01no296_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:52 2005
(287 letters)
>mm_chr18_58182555_58183241
Length = 687
Score = 456 bits (236), Expect = e-133
Identities = 273/298 (91%), Gaps = 24/298 (8%)
Strand = Plus / Minus
Query: 1 ccaggactctcatgttgctctttcctctacttagacctcgatgaatgttcgcagtctcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ccaggactctcatgttgctctttcctctacttagacctcgatgaatgttcgcagtctcca 370
Query: 61 aagccatgcaacttcatctgcaagaacaccgagggcagttaccagtgctcctgcccacgg 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 369 aagccatgcaacttcatctgcaagaacaccaagggcagttaccagtgctcctgcccacgg 310
Query: 121 gggtacgtcctgcaggaggacggaaagacgtgcaaaggtgaggggagtctcagcagccac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gggtacgtcctgcaggaggacggaaagacgtgcaaaggtgaggggagtctcagcagccac 250
Query: 181 tgcccatctttctctctctcttcaggaacgtttgcatattagccttgtttttt----tgc 236
||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 249 tgcccatctttctctctctcttcaggaacgtttgcatattagccttg----ttaaagtgc 194
Query: 237 tgctcccccccccc------c--taccagggctcctattctagaagaaatggggactt 286
|||| || | |||||||||||||||||||||||||||||||||||
Sbjct: 193 tgct--------ccgggaaactttaccagggctcctattctagaagaaatggggactt 144
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no296_k04.g1 MSMg01no296_k04.g1 CHROMAT_FILE:
MSMg01no296_k04.g1 PHD_FILE: MSMg01no296_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:53 2005
(165 letters)
>mm_chr18_58025804_58026368
Length = 565
Score = 277 bits (143), Expect = 3e-79
Identities = 156/167 (93%), Gaps = 11/167 (6%)
Strand = Plus / Plus
Query: 1 cagaaagctgtgggctttgctggccctgtgattgacaggtaagaacgttctgctcccagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagaaagctgtgggctttgctggccctgtgattgacaggtaagaacgttctgctcccagg 260
Query: 61 aacacctcaacaacaacaaaacaaaaatcccaccttctatgtaaagcgcagacagagaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacacctcaacaacaacaaaacaaaaatcccaccttctatgtaaagcgcagacagagaga 320
Query: 121 gagag-----------gagagagggaaggagggagggaaggagggag 156
||||| |||||||||||||||||||||||||||||||
Sbjct: 321 gagagagaggagagaggagagagggaaggagggagggaaggagggag 367
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 165
Length of database: 565
Length adjustment: 8
Effective length of query: 157
Effective length of database: 557
Effective search space: 87449
Effective search space used: 87449
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
