Query= MSMg01no297_a04.b1 MSMg01no297_a04.b1 CHROMAT_FILE:
MSMg01no297_a04.b1 PHD_FILE: MSMg01no297_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:21 2005
(693 letters)
>mm_chr18_44232713_44233807
Length = 1095
Score = 1253 bits (648), Expect = 0.0
Identities = 679/690 (98%), Gaps = 2/690 (0%)
Strand = Plus / Minus
Query: 6 gaattcatccagagctctcgtgcatgtaagactaagacttcttcagtgaggaagtacagg 65
||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 gaattcatcaagagttttcgtgcatgtaagactaagacttcttcagtgaggaagtacaga 675
Query: 66 ttaacgctaccttcaacatgggccagcacttagggatgtttggcagacatatttccaatg 125
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ttaatgctaccttcaacatgggccagcacttagggatgtttggcagacatatttccaatg 615
Query: 126 caaagtattaatgaatgtggaaaaatccacagctcttaaattttataggggcctcatcat 185
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 614 caaagtattaatgaaagtggaaaaatccacagctcttaaattttataggggactcatcat 555
Query: 186 ctcttcctgaagctttcccagcagtaatgcgtcataactggaagaatgggtgattgttat 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ctcttcctgaagctttcccagcagtaatgcgtcataactggaagaatgggtgattgttat 495
Query: 246 ggacacagagcctcctgccaccttcctgggaggtcatacattatgaaactagtcaatgct 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ggacacagagcctcctgccaccttcctgggaggtcatacattatgaaactagtcaatgct 435
Query: 306 g--gagtctgaagttttgtaaaccctgtcagtgattttttatgttcttggaaatctagtt 363
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ggagagtctgaagttttgtaaaccctgtcagtgattttttatgttcttggaaatctagtt 375
Query: 364 attgtaatttccagtcaatgttttactttgaaaaacctctacttggaaaaggaaggattt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 attgtaatttccagtcaatgttttactttgaaaaacctctacttggaaaaggaaggattt 315
Query: 424 gcccatacttcacatttaggaaacagcaaggcagaaactaaattcatattgaccatactt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gcccatacttcacatttaggaaacagcaaggcagaaactaaattcatattgaccatactt 255
Query: 484 aaagaaaagctgctctttacggtattttagttataacattaatataagacatttactgaa 543
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 254 aaagaaaagctgctctttactgtattttagttataacattaatataagacatttactgaa 195
Query: 544 tatttattgtgccccttctactatttcaagctctttatatgcattttctgatttaattcc 603
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 tatttattgtgacccttctactatttcaagctctttatatgcattttctgatttaattcc 135
Query: 604 ccatatgggagtgcttattctgtattttcagtttatacaagaaaaagaaactcagaaagg 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 ccatatgggagtgcttattctgtattttcagtttatacaagaaaaagaaactcagaaagg 75
Query: 664 ttacagaactgtatgatgaaatactaggac 693
||||||||||||||||||||||||||||||
Sbjct: 74 ttacagaactgtatgatgaaatactaggac 45
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1095
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1085
Effective search space: 741055
Effective search space used: 741055
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no297_a04.g1 MSMg01no297_a04.g1 CHROMAT_FILE:
MSMg01no297_a04.g1 PHD_FILE: MSMg01no297_a04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:21 2005
(666 letters)
>mm_chr18_44042267_44043332
Length = 1066
Score = 1220 bits (631), Expect = 0.0
Identities = 652/659 (98%)
Strand = Plus / Plus
Query: 7 ttgtaaagttcaaggtaacaatgacttggttgatttaggtagatatttaagttgattgga 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ttgtaaagttcaaggtaacaatgacttggttgatttaggtagatatttaagttgattgga 266
Query: 67 atgaacttggggtgcaacaaagaggtatgactcctcaccagagtgcaggagccctgtatc 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 atgaacttggggtgcaacaaagaggtatgactcctcaccagagtgcaggagccctgtatc 326
Query: 127 acaaagttaatgaattaaccttttaagaacccaaatggcaaataaacaggaaatgagaaa 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 acaaagttaatgaattaaccttttaagaacccaaatggcaaataaacaggaaatgagaaa 386
Query: 187 gatgtcctgtagttgtgttcttctactcctacggataaaggaggcttgtcaggatggatt 246
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 387 gatgtcctgtagttgtgttcttctactcctacggataaaggaggcttgtcgggatggatt 446
Query: 247 tctagaccctagcataacaccaaactgaaaacttgcaagagcatgaagacaataacaaaa 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tctagaccctagcataacaccaaactgaaaacttgcaagagcatgaagacaataacaaaa 506
Query: 307 taaagcataggaatgatgtgtgccagttcaatgtaagatgaccaagcagtcgagttcaga 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 taaagcataggaatgatgtgtgccagttcaatgtaagatgaccaagcagtcgagttcaga 566
Query: 367 agccacaaaattttgctcaagtacatcagtttttaaacctgataagtcacttcttaaacc 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 agccacaaaattttgctcaagtacatcagtttttaaacctgataagtcacttcttaaacc 626
Query: 427 cccaatccacttatatattccttatgtcacctgtctcttcagttcctacatctagcagtg 486
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 627 cccaatccacttatatattccttatgtcacctgtctcttcagttcctatatctggcagtg 686
Query: 487 tatgttttagtgcctctgactgtcatcttcttacctgggcacagactcctgttccttcct 546
| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 687 tgtgttttagtgcctctgactgtcatcttcttacctggacacagacccctgttccttcct 746
Query: 547 gttttcctattgacagaacagcaacacctttgctagagctaggaataagaatgagaatta 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 gttttcctattgacagaacagcaacacctttgctagagctaggaataagaatgagaatta 806
Query: 607 aggcagagctttgcccaaaaatgaaagcctaaaatttaggaaagaacccagctagaact 665
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 807 aggcagagctttgcccaaaaatgaaagccaaaaatttaggaaagaacccagctagaact 865
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space: 692736
Effective search space used: 692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
