Query= MSMg01no297_i05.b1 MSMg01no297_i05.b1 CHROMAT_FILE:
MSMg01no297_i05.b1 PHD_FILE: MSMg01no297_i05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:58 2005
(551 letters)
>mm_chr18_88269553_88270503
Length = 951
Score = 986 bits (510), Expect = 0.0
Identities = 540/550 (98%), Gaps = 3/550 (0%)
Strand = Plus / Plus
Query: 2 gaattctacctttagatcacagttctaggcacctcagggctatgatagcaatgtccatct 61
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 202 gaattctacctttagatcatagttctaggcacctcagggctatgatagcaatgtacatct 261
Query: 62 actcaaaatgataaggacaccaaaaaatccatgcccttttcttctcactacttctctgag 121
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 262 actcaaaatgataaggacaccaaaaaatccatgaccttttcttctcactacttctctgag 321
Query: 122 acatccatgagtctgcatatcgaagacattattacattggaatctgcagttaaaactgga 181
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct: 322 acatccatgagtctgcatatcgaagacattaatacattagaatctgcagttaaaactgga 381
Query: 182 aggcataaggtggaaaggattgcatagactgtttcagaatctctgtctcagggcttcctt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aggcataaggtggaaaggattgcatagactgtttcagaatctctgtctcagggcttcctt 441
Query: 242 gagaaaataagacagcttgtccattagcagaacctcattagtttcactgcatgatgagga 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gagaaaataagacagcttgtccattagcagaacctcattagtttcactgcatgatgagga 501
Query: 302 ccaatgattcaggtgagatgtctgaactactaattaattatatgattctgtttattttat 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ccaatgattcaggtgagatgtctgaactactaattaattatatgattctgtttattttat 561
Query: 362 ctctttagaagggcttgcaaaactataatttggtttattaaaagttttttatcaagtgca 421
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 562 ctctttagaagggcttgcaaaactataatttggtctattaaaagttttttatcaagtgca 621
Query: 422 attacttaaaagtactttttgaaataaggccaagataggtccaacattttgtgtatatat 481
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 622 attacttaaaagtactttttgaaataaggccaagataggtccaacattttgt-tatatat 680
Query: 482 atatatatatatatatatatatatatatatacatatatatatatatatatatatatatat 541
| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 681 a-at-tatatatatatatatatatatatatatatatatatatatatatatatatatatat 738
Query: 542 atccacctgc 551
||||||||||
Sbjct: 739 atccacctgc 748
Score = 110 bits (57), Expect = 2e-28
Identities = 64/67 (95%), Gaps = 2/67 (2%)
Strand = Plus / Minus
Query: 478 atatatatatatatatatatatatatatatatatacatatatatatatatatatata--t 535
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct: 740 atatatatatatatatatatatatatatatatatatatatatatatatatatatataatt 681
Query: 536 atatata 542
|||||||
Sbjct: 680 atatata 674
Score = 110 bits (57), Expect = 2e-28
Identities = 64/67 (95%), Gaps = 2/67 (2%)
Strand = Plus / Minus
Query: 476 atatatatatatatatatatatatatatatatatatacatatatatatatatatata--t 533
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct: 740 atatatatatatatatatatatatatatatatatatatatatatatatatatatataatt 681
Query: 534 atatata 540
|||||||
Sbjct: 680 atatata 674
Score = 108 bits (56), Expect = 8e-28
Identities = 63/66 (95%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 475 tatatatatatatatatatatatatatatatatatatacatatatatatatatata--ta 532
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 739 tatatatatatatatatatatatatatatatatatatatatatatatatatatataatta 680
Query: 533 tatata 538
||||||
Sbjct: 679 tatata 674
Score = 101 bits (52), Expect = 2e-25
Identities = 55/56 (98%)
Strand = Plus / Minus
Query: 488 atatatatatatatatatatatatacatatatatatatatatatatatatatatat 543
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 740 atatatatatatatatatatatatatatatatatatatatatatatatatatatat 685
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 128
Number of extensions: 72
Number of successful extensions: 72
Number of sequences better than 10.0: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 17
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space: 509081
Effective search space used: 509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no297_i05.g1 MSMg01no297_i05.g1 CHROMAT_FILE:
MSMg01no297_i05.g1 PHD_FILE: MSMg01no297_i05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:58 2005
(654 letters)
>mm_chr18_88421002_88422055
Length = 1054
Score = 1122 bits (580), Expect = 0.0
Identities = 638/662 (96%), Gaps = 8/662 (1%)
Strand = Plus / Minus
Query: 1 ttgtcttctagggatgagcctctattggttattcaatacagagtgttcagccctgaaacc 60
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 981 ttgtcttctagggatgagcctctattggttatccaatacagagtgtttagccctgaaacc 922
Query: 61 atattcagcatgttgtatttaa--------tgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 112
|||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 921 atattcagcatgttgtatttaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 862
Query: 113 tgtgtgtataataatcaaagacaaaaagtctacaaatttgagtgagggaggacatgagag 172
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 861 tgtgtgtataataatcaaagacaaaaaatctacaaatttgagtgagggaggacatgagag 802
Query: 173 aagttggctgtaaggtacctgggaggagctggaaggaagaacaagagagggcagaatgat 232
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 801 aagttggctgtaaggtacctgggaggagctggaaggaagaatgagagagggcagaatgat 742
Query: 233 gtaattttatttaaatttaagaacatattttcgagagctgtcatttgccccttattttgt 292
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 741 gtaattttatttaaatttaagaacatattttcaagagctgtcatttgcccctcattttgt 682
Query: 293 ggtacacaatttattgagtcaagagagcaagatacttaaatctttgcaggttaatacaat 352
|||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggtatgcgatttattgagtcaagagagcaagatacttaaatctttgcaggttaatacaat 622
Query: 353 gtttaaaaatgtattacgtagtatctttaacatgcctaatgagccaaggtctgcaagcaa 412
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtttaaaaatgtattacgcagtatctttaacatgcctaatgagccaaggtctgcaagcaa 562
Query: 413 atagcagaattgaataagttttaaaatgagagctaattttcaccaataacatcaagtaaa 472
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 561 atagcagaattgaataagttttaaaatgagagctaattttcaccaataacaccaagtaaa 502
Query: 473 aataataaacttaattctatgttcttttaaaacatttgcatggttactataaatctcatt 532
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacaataaacttaattctacgttcttttaaaacatttgcatggttactataaatctcatt 442
Query: 533 attcataatgaattatttgcaataaatacttgagttttaactctataaggattttgtcaa 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attcataatgaattatttgcaataaatacttgagttttaactctataaggattttgtcaa 382
Query: 593 tataatgatgcttttgaaatttttaaactacttttgtgtgactttattttccatataaag 652
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 381 tataatgatgcttttgaaattttttaactacttttgtgtgactttaatttccatataaag 322
Query: 653 gg 654
||
Sbjct: 321 gg 320
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space: 672336
Effective search space used: 672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
